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CELF2 CUGBP Elav-like family member 2 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100464198, updated on 8-Mar-2024

Summary

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Gene symbol
CELF2
Gene description
CUGBP Elav-like family member 2
Locus tag
PANDA_019092
See related
Ensembl:ENSAMEG00000004946
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 15 NC_048232.1 (9761465..10159436)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218929.1 (27898..331655, complement)

Chromosome 15 - NC_048232.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase beta-like Neighboring gene tubulin alpha-1A chain-like Neighboring gene uncharacterized LOC117796331 Neighboring gene uncharacterized LOC117796330 Neighboring gene uncharacterized LOC117796350 Neighboring gene U6 spliceosomal RNA Neighboring gene USP6 N-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048232.1 Reference ASM200744v2 Primary Assembly

    Range
    9761465..10159436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034643776.1 → XP_034499667.1  CUGBP Elav-like family member 2 isoform X1

    UniProtKB/TrEMBL
    D2I1D4
    Conserved Domains (3) summary
    cd12638
    Location:402 → 493
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  2. XM_034643782.1 → XP_034499673.1  CUGBP Elav-like family member 2 isoform X7

    UniProtKB/TrEMBL
    A0A7N5P3S2
    Related
    ENSAMEP00000032927.1, ENSAMET00000040468.1

  3. XM_034643778.1 → XP_034499669.1  CUGBP Elav-like family member 2 isoform X5

    UniProtKB/TrEMBL
    D2I1D4
    Conserved Domains (3) summary
    cd12638
    Location:426 → 517
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:39 → 122
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:131 → 211
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  4. XM_034643780.1 → XP_034499671.1  CUGBP Elav-like family member 2 isoform X1

    UniProtKB/TrEMBL
    D2I1D4
    Conserved Domains (3) summary
    cd12638
    Location:402 → 493
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  5. XM_034643779.1 → XP_034499670.1  CUGBP Elav-like family member 2 isoform X1

    UniProtKB/TrEMBL
    D2I1D4
    Conserved Domains (3) summary
    cd12638
    Location:402 → 493
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  6. XM_034643773.1 → XP_034499664.1  CUGBP Elav-like family member 2 isoform X1

    UniProtKB/TrEMBL
    D2I1D4
    Related
    ENSAMEP00000029448.1, ENSAMET00000026476.1
    Conserved Domains (3) summary
    cd12638
    Location:402 → 493
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  7. XM_034643775.1 → XP_034499666.1  CUGBP Elav-like family member 2 isoform X3

    Conserved Domains (3) summary
    cd12638
    Location:396 → 487
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  8. XM_034643781.1 → XP_034499672.1  CUGBP Elav-like family member 2 isoform X6

    Conserved Domains (4) summary
    TIGR01661
    Location:18 → 435
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cl17169
    Location:399 → 439
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_034643774.1 → XP_034499665.1  CUGBP Elav-like family member 2 isoform X2

    UniProtKB/TrEMBL
    D2I1D4
    Conserved Domains (3) summary
    cd12638
    Location:398 → 489
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  10. XM_034643777.1 → XP_034499668.1  CUGBP Elav-like family member 2 isoform X4

    UniProtKB/TrEMBL
    A0A7N5KF52, A0A7N5P3S2
    Related
    ENSAMEP00000039285.1, ENSAMET00000030166.1
    Conserved Domains (3) summary
    cd12638
    Location:392 → 483
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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