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Celf2 CUGBP, Elav-like family member 2 [ Mus musculus (house mouse) ]

Gene ID: 14007, updated on 2-Nov-2024

Summary

Official Symbol
Celf2provided by MGI
Official Full Name
CUGBP, Elav-like family member 2provided by MGI
Primary source
MGI:MGI:1338822
See related
Ensembl:ENSMUSG00000002107 AllianceGenome:MGI:1338822
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Etr-3; Napor; CELF-2; Cugbp2; mETR-3; CUG-BP2; Napor-2; B230218O03; B230345P09Rik; D230046B21Rik
Summary
Enables lncRNA binding activity. Acts upstream of or within mRNA splice site recognition. Located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; foregut; hemolymphoid system gland; limb; and urinary system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 97. Orthologous to human CELF2 (CUGBP Elav-like family member 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E18 (RPKM 23.9), frontal lobe adult (RPKM 20.6) and 15 other tissues See more
Orthologs
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Genomic context

See Celf2 in Genome Data Viewer
Location:
2 A1; 2 3.69 cM
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (6544505..7401345, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (6539694..7396341, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03593 Neighboring gene USP6 N-terminal like Neighboring gene predicted gene 13388 Neighboring gene predicted gene 13391 Neighboring gene predicted gene, 52546 Neighboring gene STARR-seq mESC enhancer starr_03597 Neighboring gene STARR-seq mESC enhancer starr_03598 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:6628430-6628675 Neighboring gene STARR-seq mESC enhancer starr_03599 Neighboring gene STARR-seq mESC enhancer starr_03600 Neighboring gene STARR-seq mESC enhancer starr_03601 Neighboring gene RIKEN cDNA 5031426D15 gene Neighboring gene STARR-seq mESC enhancer starr_03602 Neighboring gene STARR-seq mESC enhancer starr_03603 Neighboring gene STARR-seq mESC enhancer starr_03604 Neighboring gene predicted gene, 24340 Neighboring gene STARR-seq mESC enhancer starr_03606 Neighboring gene STARR-seq mESC enhancer starr_03607 Neighboring gene STARR-seq mESC enhancer starr_03608 Neighboring gene STARR-seq mESC enhancer starr_03609 Neighboring gene STARR-seq mESC enhancer starr_03610 Neighboring gene STARR-seq mESC enhancer starr_03611 Neighboring gene STARR-seq mESC enhancer starr_03612 Neighboring gene actin, cytoplasmic 3-like Neighboring gene predicted gene, 30904

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding ISO
Inferred from Sequence Orthology
more info
 
enables lncRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables pre-mRNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within mRNA splice site recognition IDA
Inferred from Direct Assay
more info
PubMed 
involved_in mRNA splice site recognition ISO
Inferred from Sequence Orthology
more info
 
involved_in post-transcriptional gene silencing ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in Flemming body ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CUGBP Elav-like family member 2
Names
CUG triplet repeat, RNA binding protein 2
CUG-BP- and ETR-3-like factor 2
RNA-binding protein BRUNOL-3
bruno-like protein 3
elav-type RNA-binding protein 3
mNapor
neuroblastoma apoptosis-related RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110228.1NP_001103698.1  CUGBP Elav-like family member 2 isoform 1

    See identical proteins and their annotated locations for NP_001103698.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1). Both variants 1 and 8 encode the same isoform.
    Source sequence(s)
    AF090697, AL845515, BC033049, CF536042
    Consensus CDS
    CCDS50494.1
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Related
    ENSMUSP00000110584.4, ENSMUST00000114934.11
    Conserved Domains (3) summary
    cd12638
    Location:434525
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:57140
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:149229
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  2. NM_001110229.2NP_001103699.1  CUGBP Elav-like family member 2 isoform 2

    See identical proteins and their annotated locations for NP_001103699.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, has multiple differences in the presence and absence of exons at its 5' end, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AL772190, AL845492, AL845515
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Conserved Domains (3) summary
    cd12638
    Location:432523
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  3. NM_001110230.2NP_001103700.1  CUGBP Elav-like family member 2 isoform 3

    See identical proteins and their annotated locations for NP_001103700.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and has multiple differences in the presence and absence of exons at its 5' end, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AL772190, AL845492, AL845515
    Consensus CDS
    CCDS59633.1
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Related
    ENSMUSP00000138764.2, ENSMUST00000182706.8
    Conserved Domains (3) summary
    cd12638
    Location:428519
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  4. NM_001110231.2NP_001103701.1  CUGBP Elav-like family member 2 isoform 4

    See identical proteins and their annotated locations for NP_001103701.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and 3' UTR, has multiple differences in the presence and absence of exons at its 5' end, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. These differences cause translation initiation at a downstream AUG and an isoform (4) that is shorter than isoform 1.
    Source sequence(s)
    AL772190, AL845485, AL845492, AL845515, CU207293
    Consensus CDS
    CCDS50492.1
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Conserved Domains (3) summary
    cd12638
    Location:398489
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  5. NM_001110232.2NP_001103702.1  CUGBP Elav-like family member 2 isoform 5

    See identical proteins and their annotated locations for NP_001103702.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and has multiple differences in the presence and absence of exons at its 5' end, compared to variant 1. These differences cause translation initiation at a downstream AUG and an isoform (5) that is shorter than isoform 1.
    Source sequence(s)
    AL772190, AL845485, AL845492, AL845515, CU207293
    Consensus CDS
    CCDS50491.1
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Related
    ENSMUSP00000002176.6, ENSMUST00000002176.13
    Conserved Domains (3) summary
    cd12638
    Location:392483
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  6. NM_001160292.2NP_001153764.1  CUGBP Elav-like family member 2 isoform 7

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR and has multiple differences in the presence and absence of exons at its 5' end and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (7) has a distinct N-terminus, lacks an internal segment, and is shorter than isoform 1.
    Source sequence(s)
    AL772190, AL845492, AL845515
    Consensus CDS
    CCDS59632.1
    UniProtKB/TrEMBL
    S4R1S7, S4R2U7
    Related
    ENSMUSP00000138355.2, ENSMUST00000183209.8
    Conserved Domains (4) summary
    TIGR01661
    Location:54467
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cl17169
    Location:431471
    RRM_SF; RNA recognition motif (RRM) superfamily
  7. NM_001160293.1NP_001153765.1  CUGBP Elav-like family member 2 isoform 1

    See identical proteins and their annotated locations for NP_001153765.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 3' UTR, compared to variant 1. Both variants 1 and 8 encode the same isoform (1).
    Source sequence(s)
    AL845515, BC026856, BC033049, CF536042
    Consensus CDS
    CCDS50494.1
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Related
    ENSMUSP00000110574.4, ENSMUST00000114924.10
    Conserved Domains (3) summary
    cd12638
    Location:434525
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:57140
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:149229
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  8. NM_001310447.1NP_001297376.1  CUGBP Elav-like family member 2 isoform 8

    See identical proteins and their annotated locations for NP_001297376.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) contains a distinct 5' UTR, lacks an in-frame portion of the 5' coding region and lacks an exon in the 3' coding region, compared to variant 1. The resulting isoform (8) is shorter than isoform 1.
    Source sequence(s)
    AK152628, AL845515, BC033049, BY773515
    Consensus CDS
    CCDS79729.1
    UniProtKB/TrEMBL
    A0A0R4J2B0, S4R2U7
    Related
    ENSMUSP00000138359.2, ENSMUST00000182879.8
    Conserved Domains (4) summary
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:18435
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:399439
    RRM_SF; RNA recognition motif (RRM) superfamily
  9. NM_001347094.1NP_001334023.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    Consensus CDS
    CCDS84468.1
    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Related
    ENSMUSP00000138297.2, ENSMUST00000150624.9
    Conserved Domains (3) summary
    cd12638
    Location:396487
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  10. NM_001406833.1NP_001393762.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845485, AL845492, AL845515, CU207293
  11. NM_001406834.1NP_001393763.1  CUGBP Elav-like family member 2 isoform 30

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845485, AL845492, AL845515, CU207293
  12. NM_001406835.1NP_001393764.1  CUGBP Elav-like family member 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845485, AL845492, AL845515, CU207293
  13. NM_001406841.1NP_001393770.1  CUGBP Elav-like family member 2 isoform 25

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
  14. NM_001406842.1NP_001393771.1  CUGBP Elav-like family member 2 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
  15. NM_001406843.1NP_001393772.1  CUGBP Elav-like family member 2 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
    UniProtKB/TrEMBL
    S4R1S7
  16. NM_001406844.1NP_001393773.1  CUGBP Elav-like family member 2 isoform 38

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
  17. NM_001406845.1NP_001393774.1  CUGBP Elav-like family member 2 isoform 36

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
  18. NM_001406846.1NP_001393775.1  CUGBP Elav-like family member 2 isoform 37

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
  19. NM_001406847.1NP_001393776.1  CUGBP Elav-like family member 2 isoform 26

    Status: VALIDATED

    Source sequence(s)
    AL772190, AL845492, AL845515
  20. NM_001406848.1NP_001393777.1  CUGBP Elav-like family member 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    Related
    ENSMUSP00000120459.3, ENSMUST00000142941.8
  21. NM_001406849.1NP_001393778.1  CUGBP Elav-like family member 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  22. NM_001406850.1NP_001393779.1  CUGBP Elav-like family member 2 isoform 37

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  23. NM_001406851.1NP_001393780.1  CUGBP Elav-like family member 2 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  24. NM_001406852.1NP_001393781.1  CUGBP Elav-like family member 2 isoform 22

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  25. NM_001406854.1NP_001393783.1  CUGBP Elav-like family member 2 isoform 23

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  26. NM_001406855.1NP_001393784.1  CUGBP Elav-like family member 2 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  27. NM_001406858.1NP_001393787.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  28. NM_001406917.1NP_001393846.1  CUGBP Elav-like family member 2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    UniProtKB/TrEMBL
    E9QA47
  29. NM_001406918.1NP_001393847.1  CUGBP Elav-like family member 2 isoform 24

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  30. NM_001406919.1NP_001393848.1  CUGBP Elav-like family member 2 isoform 23

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  31. NM_001406920.1NP_001393849.1  CUGBP Elav-like family member 2 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  32. NM_001406921.1NP_001393850.1  CUGBP Elav-like family member 2 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  33. NM_001406922.1NP_001393851.1  CUGBP Elav-like family member 2 isoform 24

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  34. NM_001406923.1NP_001393852.1  CUGBP Elav-like family member 2 isoform 19

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  35. NM_001406924.1NP_001393853.1  CUGBP Elav-like family member 2 isoform 22

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  36. NM_001406925.1NP_001393854.1  CUGBP Elav-like family member 2 isoform 36

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  37. NM_001406926.1NP_001393855.1  CUGBP Elav-like family member 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  38. NM_001406927.1NP_001393856.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  39. NM_001406928.1NP_001393857.1  CUGBP Elav-like family member 2 isoform 31

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  40. NM_001406929.1NP_001393858.1  CUGBP Elav-like family member 2 isoform 31

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  41. NM_001406930.1NP_001393859.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  42. NM_001406931.1NP_001393860.1  CUGBP Elav-like family member 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  43. NM_001406932.1NP_001393861.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  44. NM_001406933.1NP_001393862.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  45. NM_001406934.1NP_001393863.1  CUGBP Elav-like family member 2 isoform 30

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  46. NM_001406942.1NP_001393871.1  CUGBP Elav-like family member 2 isoform 18

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  47. NM_001406943.1NP_001393872.1  CUGBP Elav-like family member 2 isoform 20

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  48. NM_001406944.1NP_001393873.1  CUGBP Elav-like family member 2 isoform 21

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  49. NM_001406945.1NP_001393874.1  CUGBP Elav-like family member 2 isoform 33

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  50. NM_001406946.1NP_001393875.1  CUGBP Elav-like family member 2 isoform 16

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  51. NM_001406947.1NP_001393876.1  CUGBP Elav-like family member 2 isoform 17

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  52. NM_001406948.1NP_001393877.1  CUGBP Elav-like family member 2 isoform 15

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    UniProtKB/TrEMBL
    A0AAA9WVX7
  53. NM_001406949.1NP_001393878.1  CUGBP Elav-like family member 2 isoform 35

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  54. NM_001406950.1NP_001393879.1  CUGBP Elav-like family member 2 isoform 29

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  55. NM_001406951.1NP_001393880.1  CUGBP Elav-like family member 2 isoform 15

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    UniProtKB/TrEMBL
    A0AAA9WVX7
    Related
    ENSMUSP00000159840.1, ENSMUST00000249661.1
  56. NM_001406952.1NP_001393881.1  CUGBP Elav-like family member 2 isoform 14

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    Conserved Domains (3) summary
    cd12638
    Location:429520
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:46129
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:138218
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  57. NM_001406953.1NP_001393882.1  CUGBP Elav-like family member 2 isoform 17

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  58. NM_001406954.1NP_001393883.1  CUGBP Elav-like family member 2 isoform 27

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  59. NM_001406955.1NP_001393884.1  CUGBP Elav-like family member 2 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  60. NM_001406956.1NP_001393885.1  CUGBP Elav-like family member 2 isoform 28

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  61. NM_001406957.1NP_001393886.1  CUGBP Elav-like family member 2 isoform 28

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  62. NM_001406958.1NP_001393887.1  CUGBP Elav-like family member 2 isoform 36

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  63. NM_001406959.1NP_001393888.1  CUGBP Elav-like family member 2 isoform 27

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  64. NM_001406960.1NP_001393889.1  CUGBP Elav-like family member 2 isoform 14

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    Conserved Domains (3) summary
    cd12638
    Location:429520
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:46129
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:138218
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  65. NM_001406961.1NP_001393890.1  CUGBP Elav-like family member 2 isoform 29

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  66. NM_001406962.1NP_001393891.1  CUGBP Elav-like family member 2 isoform 34

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  67. NM_001406963.1NP_001393892.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  68. NM_001406964.1NP_001393893.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  69. NM_001406965.1NP_001393894.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  70. NM_001406966.1NP_001393895.1  CUGBP Elav-like family member 2 isoform 37

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  71. NM_001406967.1NP_001393896.1  CUGBP Elav-like family member 2 isoform 30

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  72. NM_001406968.1NP_001393897.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  73. NM_001406969.1NP_001393898.1  CUGBP Elav-like family member 2 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
    UniProtKB/TrEMBL
    A0A0R4J2B0
  74. NM_001406970.1NP_001393899.1  CUGBP Elav-like family member 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  75. NM_001406971.1NP_001393900.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  76. NM_001406972.1NP_001393901.1  CUGBP Elav-like family member 2 isoform 31

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  77. NM_001406973.1NP_001393902.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515, AL929240
  78. NM_001406974.1NP_001393903.1  CUGBP Elav-like family member 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
  79. NM_001406975.1NP_001393904.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
  80. NM_001406976.1NP_001393905.1  CUGBP Elav-like family member 2 isoform 37

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
  81. NM_001406977.1NP_001393906.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
  82. NM_001406978.1NP_001393907.1  CUGBP Elav-like family member 2 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
    UniProtKB/TrEMBL
    A0A0R4J2B0
  83. NM_001406979.1NP_001393908.1  CUGBP Elav-like family member 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
    Related
    ENSMUSP00000110577.2, ENSMUST00000114927.9
  84. NM_001406980.1NP_001393909.1  CUGBP Elav-like family member 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
    Related
    ENSMUSP00000097996.5, ENSMUST00000100429.11
  85. NM_001406981.1NP_001393910.1  CUGBP Elav-like family member 2 isoform 32

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
  86. NM_001406982.1NP_001393911.1  CUGBP Elav-like family member 2 isoform 33

    Status: VALIDATED

    Source sequence(s)
    AL845492, AL845515
  87. NM_010160.2NP_034290.2  CUGBP Elav-like family member 2 isoform 6

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 3' UTR and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting isoform (6) is shorter than isoform 1.
    Source sequence(s)
    AK135166, AK164914, AL845515, BY145030, BY495559, CF536042
    Consensus CDS
    CCDS50493.1
    UniProtKB/TrEMBL
    E9QA47, S4R2U7
    Related
    ENSMUSP00000130829.2, ENSMUST00000170438.8
    Conserved Domains (4) summary
    TIGR01661
    Location:60473
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12631
    Location:57140
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:149229
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cl17169
    Location:437477
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    6544505..7401345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238953.4XP_011237255.1  CUGBP Elav-like family member 2 isoform X12

    See identical proteins and their annotated locations for XP_011237255.1

    Conserved Domains (3) summary
    cd12638
    Location:402493
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  2. XM_036158239.1XP_036014132.1  CUGBP Elav-like family member 2 isoform X12

    Conserved Domains (3) summary
    cd12638
    Location:402493
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  3. XM_036158238.1XP_036014131.1  CUGBP Elav-like family member 2 isoform X9

    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Conserved Domains (3) summary
    cd12638
    Location:428519
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  4. XM_036158232.1XP_036014125.1  CUGBP Elav-like family member 2 isoform X6

    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Conserved Domains (3) summary
    cd12638
    Location:434525
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  5. XM_036158246.1XP_036014139.1  CUGBP Elav-like family member 2 isoform X17

    UniProtKB/TrEMBL
    S4R2U7
    Conserved Domains (4) summary
    TIGR01661
    Location:54471
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cl17169
    Location:435475
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. XM_036158235.1XP_036014128.1  CUGBP Elav-like family member 2 isoform X7

    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Conserved Domains (3) summary
    cd12638
    Location:432523
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  7. XM_006497335.5XP_006497398.1  CUGBP Elav-like family member 2 isoform X4

    Conserved Domains (3) summary
    cd12631
    Location:51134
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:143223
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:438529
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  8. XM_006497334.4XP_006497397.1  CUGBP Elav-like family member 2 isoform X2

    See identical proteins and their annotated locations for XP_006497397.1

    UniProtKB/Swiss-Prot
    A2AS10, A2AS11, A2AS15, Q3TNX4, Q3TTI4, Q3TUB8, Q3U668, Q3U7J8, Q3U9F2, Q3UVH4, Q9R0B2, Q9Z0H4, Q9Z187
    Conserved Domains (3) summary
    cd12638
    Location:440531
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:57140
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:149229
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  9. XM_030247364.1XP_030103224.1  CUGBP Elav-like family member 2 isoform X26

    Conserved Domains (2) summary
    cd12638
    Location:188279
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:88275
    ELAV_HUD_SF; ELAV/HuD family splicing factor

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_183219.1: Suppressed sequence

    Description
    NM_183219.1: This RefSeq was suppressed because it appears to represent 3'UTR with an unsupported predicted protein.