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FIGLA folliculogenesis specific bHLH transcription factor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100411838, updated on 8-Mar-2024

Summary

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Gene symbol
FIGLA
Gene description
folliculogenesis specific bHLH transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See FIGLA in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 14 NC_071455.1 (41089853..41105418)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 14 NC_048396.1 (40048373..40063842)

Chromosome 14 - NC_071455.1Genomic Context describing neighboring genes Neighboring gene CD207 molecule Neighboring gene C-type lectin domain family 4 member F Neighboring gene adducin 2 Neighboring gene transforming growth factor alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
factor in the germline alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071455.1 Reference mCalJa1.2.pat.X

    Range
    41089853..41105418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054244837.1 → XP_054100812.1  factor in the germline alpha isoform X1

  2. XM_035272339.2 → XP_035128230.1  factor in the germline alpha isoform X2

    UniProtKB/TrEMBL
    F6ZZ60
    Conserved Domains (1) summary
    cd11422
    Location:67 → 122
    bHLH_TS_FIGLA; basic helix-loop-helix (bHLH) domain found in factor in the germline alpha (FIGLA) and similar proteins
Nucleotide Protein
Heading Accession and Version

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