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YTHDC1 YTH N6-methyladenosine RNA binding protein C1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387580, updated on 8-Mar-2024

Summary

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Gene symbol
YTHDC1
Gene description
YTH N6-methyladenosine RNA binding protein C1
See related
Ensembl:ENSCJAG00000009934
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 3 NC_071444.1 (125243226..125279390)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 3 NC_048385.1 (127784603..127820773)

Chromosome 3 - NC_071444.1Genomic Context describing neighboring genes Neighboring gene cyclin-G1-like Neighboring gene transmembrane serine protease 11E Neighboring gene MICOS complex subunit MIC26-like Neighboring gene transmembrane serine protease 11B Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N6-methyladenosine-containing RNA reader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
YTH domain-containing protein 1
Names
YTH domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071444.1 Reference mCalJa1.2.pat.X

    Range
    125243226..125279390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035293626.2 → XP_035149517.1  YTH domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    F7FII3
    Conserved Domains (1) summary
    cd21134
    Location:339 → 475
    YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

  2. XM_035293624.2 → XP_035149515.1  YTH domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8PI86
    Conserved Domains (1) summary
    cd21134
    Location:357 → 493
    YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

  3. XM_003732494.4 → XP_003732542.2  YTH domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8PI86
    Conserved Domains (1) summary
    cd21134
    Location:357 → 493
    YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

  4. XM_035293625.2 → XP_035149516.1  YTH domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    F7FII3
    Conserved Domains (1) summary
    cd21134
    Location:339 → 475
    YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily
Nucleotide Protein
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