U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phyh phytanoyl-CoA 2-hydroxylase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100379998, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
phyhprovided by Xenbase
Official Full Name
phytanoyl-CoA 2-hydroxylaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-943669
See related
Ensembl:ENSXETG00000009115
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See phyh in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (81829587..81861013)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (72221207..72249673)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene BEN domain containing 7 Neighboring gene selenophosphate synthetase 1 Neighboring gene upper zone of growth plate and cartilage matrix associated Neighboring gene minichromosome maintenance 10 replication initiation factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables phytanoyl-CoA dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid alpha-oxidation IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
phytanoyl-CoA dioxygenase, peroxisomal

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    81829587..81861013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002935242.5 → XP_002935288.2  phytanoyl-CoA dioxygenase, peroxisomal

    UniProtKB/TrEMBL
    F6Z5Y3
    Related
    ENSXETP00000019993.5, ENSXETT00000019993.5
    Conserved Domains (1) summary
    pfam05721
    Location:58 → 274
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.