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Phyh phytanoyl-CoA hydroxylase [ Mus musculus (house mouse) ]

Gene ID: 16922, updated on 3-Feb-2019

Summary

Official Symbol
Phyhprovided by MGI
Official Full Name
phytanoyl-CoA hydroxylaseprovided by MGI
Primary source
MGI:MGI:891978
See related
Ensembl:ENSMUSG00000026664
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PAHX; Lnap1; AI256161; AI265699
Expression
Broad expression in liver adult (RPKM 350.9), heart adult (RPKM 225.3) and 18 other tissues See more
Orthologs

Genomic context

See Phyh in Genome Data Viewer
Location:
2; 2 A1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (4918996..4938743)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (4840042..4859789)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene protein regulator of cytokinesis 1 pseudogene Neighboring gene selenophosphate synthetase 1 Neighboring gene predicted gene, 46728 Neighboring gene acyl-CoA-binding protein pseudogene Neighboring gene 40S ribosomal protein S28 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 
carboxylic acid binding ISO
Inferred from Sequence Orthology
more info
 
catalytic activity IDA
Inferred from Direct Assay
more info
PubMed 
cofactor binding ISO
Inferred from Sequence Orthology
more info
 
dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 
ferrous iron binding ISO
Inferred from Sequence Orthology
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
phytanoyl-CoA dioxygenase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phytanoyl-CoA dioxygenase activity ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
2-oxobutyrate catabolic process ISO
Inferred from Sequence Orthology
more info
 
2-oxoglutarate metabolic process ISO
Inferred from Sequence Orthology
more info
 
fatty acid alpha-oxidation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
fatty acid alpha-oxidation IDA
Inferred from Direct Assay
more info
PubMed 
fatty acid alpha-oxidation ISO
Inferred from Sequence Orthology
more info
 
isoprenoid metabolic process ISO
Inferred from Sequence Orthology
more info
 
methyl-branched fatty acid metabolic process ISO
Inferred from Sequence Orthology
more info
 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrion HDA PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
peroxisome ISO
Inferred from Sequence Orthology
more info
 
peroxisome TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
phytanoyl-CoA dioxygenase, peroxisomal
Names
lupus nephritis-associated peptide 1
phytanic acid oxidase
phytanoyl-CoA alpha-hydroxylase
NP_034856.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010726.2NP_034856.1  phytanoyl-CoA dioxygenase, peroxisomal precursor

    See identical proteins and their annotated locations for NP_034856.1

    Status: VALIDATED

    Source sequence(s)
    AK146753, BY139974, BY369819
    Consensus CDS
    CCDS15660.1
    UniProtKB/Swiss-Prot
    O35386
    UniProtKB/TrEMBL
    Q3TPC7
    Related
    ENSMUSP00000027975.7, ENSMUST00000027975.7
    Conserved Domains (1) summary
    pfam05721
    Location:61277
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    4918996..4938743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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