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twist1 twist family bHLH transcription factor 1 [ Anolis carolinensis (green anole) ]

Gene ID: 100379171, updated on 8-Mar-2024

Summary

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Gene symbol
twist1
Gene description
twist family bHLH transcription factor 1
See related
Ensembl:ENSACAG00000011825
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 6 NC_085846.1 (85927672..85937437)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 6 NC_014781.1 (28639794..28649422, complement)

Chromosome 6 - NC_085846.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene Fer3 like bHLH transcription factor Neighboring gene uncharacterized LOC134299991 Neighboring gene histone deacetylase 9 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of the vertebrate twist family and synfunctionalization: a mechanism for differential gene loss through merging of expression domains. Gitelman I. Mol Biol Evol, 2007 Sep. PMID 17567594

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
twist-related protein 1
Names
twist 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293112.1 → NP_001280041.1  twist-related protein 1

    See identical proteins and their annotated locations for NP_001280041.1

    Status: PROVISIONAL

    Source sequence(s)
    BK006262
    UniProtKB/TrEMBL
    A7Z092
    Related
    ENSACAP00000011558.2, ENSACAT00000011798.2
    Conserved Domains (1) summary
    pfam00010
    Location:121 → 171
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085846.1 Reference rAnoCar3.1.pri

    Range
    85927672..85937437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003222017.4 → XP_003222065.1  twist-related protein 1 isoform X1

    See identical proteins and their annotated locations for XP_003222065.1

    UniProtKB/TrEMBL
    A7Z092
    Conserved Domains (1) summary
    pfam00010
    Location:121 → 171
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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