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OTX2-AS1 OTX2 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 100309464, updated on 13-May-2022

Summary

Official Symbol
OTX2-AS1provided by HGNC
Official Full Name
OTX2 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:43906
See related
Ensembl:ENSG00000248550 AllianceGenome:HGNC:43906
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OTX2OS1
Expression
Low expression observed in reference dataset See more
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Genomic context

See OTX2-AS1 in Genome Data Viewer
Location:
14q22.3
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (56812006..56931308)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (51017800..51137188)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (57278724..57398026)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903322 Neighboring gene orthodenticle homeobox 2 Neighboring gene RNA, U6 small nuclear 1204, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 461, pseudogene Neighboring gene VISTA enhancer hs1579 Neighboring gene VISTA enhancer hs1150 Neighboring gene uncharacterized LOC124903323 Neighboring gene VISTA enhancer hs1218

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • OTX2 antisense RNA 1 (non-protein coding)
  • Otx2 opposite strand transcript 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029385.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has multiple differences, including a 5' end that extends into an intron, resulting in a longer transcript compared to variant 2.
    Source sequence(s)
    AB593040, AL161757, BC041486
    Related
    ENST00000534909.2
  2. NR_146411.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the shorter variant.
    Source sequence(s)
    AB593041, AL162831

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    56812006..56931308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    51017800..51137188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)