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RPL13AP11 ribosomal protein L13a pseudogene 11 [ Homo sapiens (human) ]

Gene ID: 100271276, updated on 17-Sep-2024

Summary

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Official Symbol
RPL13AP11provided by HGNC
Official Full Name
ribosomal protein L13a pseudogene 11provided by HGNC
Primary source
HGNC:HGNC:36566
See related
Ensembl:ENSG00000229657 AllianceGenome:HGNC:36566
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL13A_1_152
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Genomic context

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See RPL13AP11 in Genome Data Viewer
Location:
1q32.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (204946568..204947194)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (204210933..204211559)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (204915696..204916322)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204678087-204679056 Neighboring gene uncharacterized LOC105371693 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204679057-204680026 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204680027-204680996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204680997-204681964 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:204683914-204684551 Neighboring gene uncharacterized LOC105371695 Neighboring gene uncharacterized LOC105371694 Neighboring gene uncharacterized LOC124900453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1730 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204721386-204721927 Neighboring gene neurofascin Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:204891185-204891885 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204892586-204893286 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204893287-204893986 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1731 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2373 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204981530-204982083 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204983191-204983742 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204987113-204987910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204987911-204988706 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:204994888-204995728 Neighboring gene melanoma risk locus-associated MPRA allelic enhancers 1:205012106 and 1:205012198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:205016337-205016841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:205023369-205024096 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:205041546-205042745 Neighboring gene melanoma risk locus-associated MPRA allelic enhancers 1:205044354 and 1:205044416 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 1:205044866 Neighboring gene contactin 2 Neighboring gene transmembrane protein 81

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010895.2 

    Range
    101..727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    204946568..204947194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    204210933..204211559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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