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STRN striatin [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100225477, updated on 8-Mar-2024

Summary

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Gene symbol
STRN
Gene description
striatin
See related
Ensembl:ENSTGUG00000008691
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 3 NC_044214.2 (78389783..78458319, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 3 NC_045001.1 (77379494..77448140, complement)

Chromosome 3 - NC_044214.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121469743 Neighboring gene uncharacterized LOC121469744 Neighboring gene vitrin Neighboring gene HEAT repeat containing 5B Neighboring gene G-patch domain containing 11 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables armadillo repeat domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase 2A binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-containing complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
striatin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044214.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    78389783..78458319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030268452.3 → XP_030124312.3  striatin isoform X4

    UniProtKB/TrEMBL
    H0ZEH6
    Conserved Domains (2) summary
    cd00200
    Location:471 → 795
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:485 → 530
    7WD40; WD40 repeat [structural motif]

  2. XM_030268450.3 → XP_030124310.3  striatin isoform X2

    UniProtKB/TrEMBL
    H0ZEH6
    Conserved Domains (2) summary
    cd00200
    Location:508 → 831
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:522 → 567
    7WD40; WD40 repeat [structural motif]

  3. XM_030268453.3 → XP_030124313.3  striatin isoform X5

    Conserved Domains (2) summary
    cd00200
    Location:442 → 766
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:456 → 501
    7WD40; WD40 repeat [structural motif]

  4. XM_030268451.3 → XP_030124311.3  striatin isoform X3

    UniProtKB/TrEMBL
    H0ZEH6
    Conserved Domains (2) summary
    cd00200
    Location:479 → 803
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:493 → 538
    7WD40; WD40 repeat [structural motif]

  5. XM_030268449.3 → XP_030124309.3  striatin isoform X1

    UniProtKB/TrEMBL
    H0ZEH6
    Conserved Domains (2) summary
    cd00200
    Location:508 → 832
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:522 → 567
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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