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TPT1-AS1 TPT1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100190939, updated on 25-Sep-2022

Summary

Official Symbol
TPT1-AS1provided by HGNC
Official Full Name
TPT1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43686
See related
AllianceGenome:HGNC:43686
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Biomarker of malignant astrocytoma. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in stomach (RPKM 54.2), salivary gland (RPKM 49.4) and 23 other tissues See more
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Genomic context

See TPT1-AS1 in Genome Data Viewer
Location:
13q14.13
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (45341345..45391483)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (44561592..44610617)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (45915480..45965618)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903169 Neighboring gene small nucleolar RNA, H/ACA box 31B Neighboring gene small nucleolar RNA, H/ACA box 31 Neighboring gene tumor protein, translationally-controlled 1 Neighboring gene Sharpr-MPRA regulatory region 12652 Neighboring gene reticulocalbin 1 pseudogene 2 Neighboring gene solute carrier family 25 member 30 Neighboring gene SLC25A30 antisense RNA 1 Neighboring gene peptidylprolyl isomerase A pseudogene 25

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • TPT1 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ42341, FLJ45662

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024458.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF318337, AL138963

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    45341345..45391483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    44561592..44610617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)