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LOC100177239 hematopoietic prostaglandin D synthase [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100177239, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100177239
Gene description
hematopoietic prostaglandin D synthase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100177239 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 1 NC_020166.2 (1687613..1689966, complement)

Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene L-proline trans-4-hydroxylase-like Neighboring gene mannan-binding lectin serine protease 1-like Neighboring gene metallo-beta-lactamase domain-containing protein 1-like Neighboring gene disks large homolog 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020166.2 Chromosome 1 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutathione metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hematopoietic prostaglandin D synthase; prostaglandin D synthase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044363.2 → NP_001037828.2  prostaglandin D synthase-like

    Status: VALIDATED

    Source sequence(s)
    EAAA01000071
    UniProtKB/TrEMBL
    A0A1W3JUW2, F6RDW1, Q0PMD4, Q0PMD5
    Conserved Domains (2) summary
    PTZ00057
    Location:6 → 195
    PTZ00057; glutathione s-transferase; Provisional
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020166.2 Reference KH Primary Assembly

    Range
    1687613..1689966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026838341.1 → XP_026694142.1  hematopoietic prostaglandin D synthase

    UniProtKB/TrEMBL
    A0A1W3JUW2, F6RDW1, Q0PMD4, Q0PMD5
    Conserved Domains (2) summary
    PTZ00057
    Location:6 → 195
    PTZ00057; glutathione s-transferase; Provisional
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...

  2. XM_009863861.3 → XP_009862163.1  hematopoietic prostaglandin D synthase

    UniProtKB/TrEMBL
    A0A1W3JUW2, F6RDW1, Q0PMD4, Q0PMD5
    Conserved Domains (2) summary
    PTZ00057
    Location:6 → 195
    PTZ00057; glutathione s-transferase; Provisional
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...
Nucleotide Protein
Heading Accession and Version

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