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HPCAL1 hippocalcin like 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100173622, updated on 26-Mar-2024

Summary

Gene symbol
HPCAL1
Gene description
hippocalcin like 1
Locus tag
CR201_G0022582
See related
Ensembl:ENSPPYG00000012655
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See HPCAL1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 12 NC_071997.2 (122478391..122509090, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 2A NC_071986.1 (119028462..119059161, complement)

Chromosome 12 - NC_071997.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene uncharacterized LOC129057570 Neighboring gene ornithine decarboxylase 1 Neighboring gene uncharacterized LOC129057568 Neighboring gene small nucleolar RNA SNORA51

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001133153.1NP_001126625.1  hippocalcin-like protein 1

    See identical proteins and their annotated locations for NP_001126625.1

    Status: PROVISIONAL

    Source sequence(s)
    CR860666
    UniProtKB/Swiss-Prot
    Q5R632
    UniProtKB/TrEMBL
    A0A2J8V413
    Related
    ENSPPYP00000014129.1, ENSPPYT00000014701.2
    Conserved Domains (3) summary
    COG5126
    Location:13179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:65126
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13833
    Location:3986
    EF-hand_8; EF-hand domain pair

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071997.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    122478391..122509090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)