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PIGT phosphatidylinositol glycan anchor biosynthesis class T [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172943, updated on 6-Jun-2024

Summary

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Gene symbol
PIGT
Gene description
phosphatidylinositol glycan anchor biosynthesis class T
Locus tag
CR201_G0038399
See related
Ensembl:ENSPPYG00000011057
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 21 NC_072006.2 (49687399..49697614)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 20 NC_072005.1 (43598377..43608449)

Chromosome 21 - NC_072006.2Genomic Context describing neighboring genes Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2 Neighboring gene WAP four-disulfide core domain 2 Neighboring gene serine peptidase inhibitor, Kunitz type 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative sequence analyses reveal rapid and divergent evolutionary changes of the WFDC locus in the primate lineage. Hurle B, et al. Genome Res, 2007 Mar. PMID 17267810, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp468H065

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of GPI anchor to protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI transamidase component PIG-T

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001132530.1 → NP_001126002.1  GPI transamidase component PIG-T precursor

    See identical proteins and their annotated locations for NP_001126002.1

    Status: PROVISIONAL

    Source sequence(s)
    DP000045
    UniProtKB/TrEMBL
    A0A2J8XVN3, A0A6D2WPH7, A4K2W4, Q5R936
    Related
    ENSPPYP00000012357.1, ENSPPYT00000012839.2
    Conserved Domains (1) summary
    pfam04113
    Location:32 → 565
    Gpi16; Gpi16 subunit, GPI transamidase component

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072006.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    49687399..49697614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063720431.1 → XP_063576501.1  GPI transamidase component PIG-T isoform X1

    UniProtKB/TrEMBL
    Q5R936

  2. XM_054541460.2 → XP_054397435.1  GPI transamidase component PIG-T isoform X3

    UniProtKB/TrEMBL
    A0A2J8XVM2, A0A8I5YK32, Q5R936

  3. XM_063720434.1 → XP_063576504.1  GPI transamidase component PIG-T isoform X5

    UniProtKB/TrEMBL
    Q5R936

  4. XM_063720432.1 → XP_063576502.1  GPI transamidase component PIG-T isoform X2

    UniProtKB/TrEMBL
    A0A2J8XVM6, A0A2J8XVN1, A0A8I5U9P8

  5. XM_063720433.1 → XP_063576503.1  GPI transamidase component PIG-T isoform X4

    UniProtKB/TrEMBL
    A0A2J8XVN1, A0A8I5U9P8

  6. XM_054541461.1 → XP_054397436.1  GPI transamidase component PIG-T isoform X6

    UniProtKB/TrEMBL
    A0A2J8XVQ6, A0A8I5U595
Nucleotide Protein
Heading Accession and Version

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