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tmx1.L thioredoxin-related transmembrane protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158326, updated on 17-Aug-2024

Summary

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Official Symbol
tmx1.L
Official Full Name
thioredoxin-related transmembrane protein 1 L homeolog
Primary source
Xenbase:XB-GENE-6078725
Locus tag
XELAEV_18039674mg
See related
EnsemblRapid:ENSXLAG00005019485
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmx1; txndc1
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Genomic context

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Location:
chromosome: 8L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (87054364..87067284, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (72362819..72375872, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 6 L homeolog Neighboring gene uncharacterized LOC121397089 Neighboring gene uncharacterized LOC121397088 Neighboring gene tripartite motif containing 9 L homeolog Neighboring gene phosphorylase, glycogen, liver L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
thioredoxin-related transmembrane protein 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127774.1 → NP_001121246.1  thioredoxin-related transmembrane protein 1 L homeolog precursor

    See identical proteins and their annotated locations for NP_001121246.1

    Status: PROVISIONAL

    Source sequence(s)
    BC160781
    UniProtKB/TrEMBL
    A0A974H8B2, B1H1Y3
    Related
    ENSXLAP00005057234.1, ENSXLAT00005058581.1
    Conserved Domains (1) summary
    cd02994
    Location:23 → 123
    PDI_a_TMX; PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    87054364..87067284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228543.2 → XP_018084032.1  thioredoxin-related transmembrane protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974H8B2, B1H1Y3
    Conserved Domains (1) summary
    cd02994
    Location:23 → 123
    PDI_a_TMX; PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the ...

  2. XM_018228544.2 → XP_018084033.1  thioredoxin-related transmembrane protein 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974H8B2, B1H1Y3
    Conserved Domains (1) summary
    cd02994
    Location:23 → 123
    PDI_a_TMX; PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the ...
Nucleotide Protein Strain
Heading Accession and Version

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