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RAP2A RAP2A, member of RAS oncogene family [ Sus scrofa (pig) ]

Gene ID: 100155367, updated on 17-Aug-2024

Summary

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Official Symbol
RAP2Aprovided by VGNC
Official Full Name
RAP2A, member of RAS oncogene familyprovided by VGNC
Primary source
VGNC:VGNC:92088
See related
Ensembl:ENSSSCG00000039812
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 17.7), ovary (RPKM 16.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RAP2A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (66679162..66718565)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (73763506..73765553, complement)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene muscleblind like splicing regulator 2 Neighboring gene uncharacterized LOC110255848 Neighboring gene uncharacterized LOC106505333 Neighboring gene 40S ribosomal protein S15 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rap protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rap-2a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    66679162..66718565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021065816.1 → XP_020921475.1  ras-related protein Rap-2a

    UniProtKB/TrEMBL
    A0A286ZUT3, A0A4X1UXA9
    Related
    ENSSSCP00000035215.1, ENSSSCT00000037486.3
    Conserved Domains (1) summary
    cd04176
    Location:3 → 165
    Rap2; Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c
Nucleotide Protein
Heading Accession and Version

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