NR2E1 nuclear receptor subfamily 2 group E member 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: NR2E1provided by VGNC
Official Full Name: nuclear receptor subfamily 2 group E member 1provided by VGNC
Primary source: VGNC:VGNC:90878
See related: Ensembl:ENSSSCG00000004384
Gene type: protein coding
RefSeq status: MODEL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Low expression observed in reference dataset See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	1	NC_010443.5 (74266667..74292686)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	1	NC_010443.4 (83451928..83562972)

Chromosome 1 - NC_010443.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

REN49730 (e-PCR)
- UniSTS:374530

REN49735 (e-PCR)
- UniSTS:374535

REN49736 (e-PCR)
- UniSTS:374536

REN49777 (e-PCR)
- UniSTS:374577

REN49778 (e-PCR)
- UniSTS:374578

stSG634169 (e-PCR)
- UniSTS:459849

REN49712 (e-PCR)
- UniSTS:374512

ECD05899 (e-PCR)
- UniSTS:286961

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclear receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in anatomical structure development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nuclear receptor subfamily 2 group E member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010443.5 Reference Sscrofa11.1 Primary Assembly

Range

74266667..74292686

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003353279.4 → XP_003353327.1 nuclear receptor subfamily 2 group E member 1

See identical proteins and their annotated locations for XP_003353327.1

UniProtKB/TrEMBL

A0A4X1V8U6, A0A8D1KG40, I3LU21

Related

ENSSSCP00000027620.1, ENSSSCT00000022342.2

Conserved Domains (2) summary

cd06950
Location:154 → 369

NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors

cd07163
Location:8 → 99

NR_DBD_TLX; DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers