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UPK3BL1 uroplakin 3B like 1 [ Homo sapiens (human) ]

Gene ID: 100134938, updated on 23-Nov-2021

Summary

Official Symbol
UPK3BL1provided by HGNC
Official Full Name
uroplakin 3B like 1provided by HGNC
Primary source
HGNC:HGNC:37278
See related
Ensembl:ENSG00000267368
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UPLP; UPK3BL
Expression
Ubiquitous expression in esophagus (RPKM 86.5), thyroid (RPKM 43.5) and 25 other tissues See more
Orthologs
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Genomic context

See UPK3BL1 in Genome Data Viewer
Location:
7q22.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (102637025..102642791, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (102277472..102283238, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene POLR2J3-UPK3BL2 readthrough Neighboring gene RNA polymerase II subunit J3 Neighboring gene RAS p21 protein activator 4 Neighboring gene POLR2J2-UPK3BL1 readthrough Neighboring gene speedy/RINGO cell cycle regulator family member E2B Neighboring gene RNA polymerase II subunit J2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough POLR2J2-UPK3BL1

Readthrough gene: POLR2J2-UPK3BL1, Included gene: POLR2J2

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uroplakin-3b-like protein 1
Names
uroplakin 3C protein
uroplakin-3-like protein
uroplakin-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114403.3NP_001107875.1  uroplakin-3b-like protein 1 precursor

    See identical proteins and their annotated locations for NP_001107875.1

    Status: VALIDATED

    Source sequence(s)
    AC105052, EU341824
    Consensus CDS
    CCDS47675.1
    UniProtKB/Swiss-Prot
    B0FP48, E5RIL1
    Related
    ENSP00000342938.8, ENST00000340457.8
    Conserved Domains (1) summary
    cl06408
    Location:41211
    UP_III_II; Uroplakin IIIb, IIIa and II

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    102637025..102642791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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