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LOC100133920 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene [ Homo sapiens (human) ]

Gene ID: 100133920, updated on 10-Oct-2023

Summary

Gene symbol
LOC100133920
Gene description
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene
See related
Ensembl:ENSG00000290941
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 1.2), testis (RPKM 0.1) and 1 other tissue See more
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Genomic context

See LOC100133920 in Genome Data Viewer
Location:
2q11.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (94575976..94587183, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (95082501..95093708, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 (PATCHES) NW_003571032.1 (13552..24759, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:92260599-92261098 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92267371-92268104 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92268105-92268836 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:92268880-92269438 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:92269439-92269997 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92272700-92273290 Neighboring gene OCT4 hESC enhancer GRCh37_chr2:92273417-92273948 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92274294-92275261 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:92280337-92280859 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:92280860-92281382 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:92281383-92281904 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92281953-92282894 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92282895-92283836 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92283847-92284546 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92290133-92290754 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92290755-92291376 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92284547-92285244 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:92292175-92292690 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92295141-92296062 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92296063-92296983 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92296984-92297904 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92297905-92298825 Neighboring gene immunoglobulin kappa variable 1/OR2-2 (pseudogene) Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92300655-92301407 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92305056-92305643 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92305644-92306230 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92308578-92309164 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92312687-92313272 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92312099-92312686 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92311513-92312098 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92310925-92311512 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92310339-92310924 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92309165-92309750 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92307991-92308577 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92307404-92307990 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92306818-92307403 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92306231-92306817 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92309751-92310338 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92318969-92319706 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92319707-92320444 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92318231-92318968 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92317492-92318230 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92316754-92317491 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92315277-92316014 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92314538-92315276 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92313860-92314445 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92313273-92313859 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92316015-92316753 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92322661-92323397 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92324875-92325612 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92324137-92324874 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92323398-92324136 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92321922-92322660 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92321184-92321921 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:92320445-92321183 Neighboring gene MAGE-like protein 2 Neighboring gene BMS1 pseudogene 23 Neighboring gene uncharacterized LOC107985916 Neighboring gene aquaporin 7B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024443.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL845331
    Related
    ENST00000562821.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    94575976..94587183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    95082501..95093708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)