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LOC100118660 116 kDa U5 small nuclear ribonucleoprotein component [ Nasonia vitripennis (jewel wasp) ]

Gene ID: 100118660, updated on 10-May-2024

Summary

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Gene symbol
LOC100118660
Gene description
116 kDa U5 small nuclear ribonucleoprotein component
See related
NASONIABASE:NV15541
Gene type
protein coding
RefSeq status
MODEL
Organism
Nasonia vitripennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
Orthologs
fruit fly all
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Genomic context

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See LOC100118660 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NC_045759.1 (23063515..23067871, complement)
103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279634.1 (1692243..1696599)

Chromosome 3 - NC_045759.1Genomic Context describing neighboring genes Neighboring gene mitochondrial tRNA-specific 2-thiouridylase 1 Neighboring gene dymeclin Neighboring gene calsyntenin-1 Neighboring gene polycomb group protein Psc Neighboring gene polycomb group protein Psc

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
116 kDa U5 small nuclear ribonucleoprotein component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nvit_psr_1.1

Genomic

  1. NC_045759.1 Reference Nvit_psr_1.1

    Range
    23063515..23067871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031927454.1 → XP_031783314.1  116 kDa U5 small nuclear ribonucleoprotein component

    UniProtKB/TrEMBL
    A0A7M7Q893
    Conserved Domains (2) summary
    cl30786
    Location:118 → 962
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 115
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  2. XM_031927456.1 → XP_031783316.1  116 kDa U5 small nuclear ribonucleoprotein component

    UniProtKB/TrEMBL
    A0A7M7Q893
    Conserved Domains (2) summary
    cl30786
    Location:118 → 962
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 115
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  3. XM_031927455.1 → XP_031783315.1  116 kDa U5 small nuclear ribonucleoprotein component

    UniProtKB/TrEMBL
    A0A7M7Q893
    Conserved Domains (2) summary
    cl30786
    Location:118 → 962
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 115
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  4. XM_031927457.2 → XP_031783317.1  116 kDa U5 small nuclear ribonucleoprotein component

    UniProtKB/TrEMBL
    A0A7M7Q893
    Conserved Domains (2) summary
    cl30786
    Location:118 → 962
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 115
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Nucleotide Protein Strain
Heading Accession and Version

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