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SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 [ Equus caballus (horse) ]

Gene ID: 100068400, updated on 8-Mar-2024

Summary

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Official Symbol
SOHLH1provided by VGNC
Official Full Name
spermatogenesis and oogenesis specific basic helix-loop-helix 1provided by VGNC
Primary source
VGNC:VGNC:52025
See related
Ensembl:ENSECAG00000024372
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (38792339..38797173)
102 previous assembly EquCab2.0 (GCF_000002305.2) 25 NC_009168.2 (38143361..38172452)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene calmodulin regulated spectrin associated protein 1 Neighboring gene microRNA mir-9040 Neighboring gene potassium sodium-activated channel subfamily T member 1 Neighboring gene P19 lipocalin Neighboring gene lipocalin 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    38792339..38797173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023629581.1 → XP_023485349.1  spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cd00083
    Location:54 → 96
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  2. XM_023629578.1 → XP_023485346.1  spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    F6XKS8
    Related
    ENSECAP00000021836.2, ENSECAT00000026196.4
    Conserved Domains (1) summary
    cd00083
    Location:61 → 103
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  3. XM_023629580.1 → XP_023485348.1  spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cd00083
    Location:60 → 102
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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