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CNN3 calponin 3 [ Equus caballus (horse) ]

Gene ID: 100058159, updated on 17-Aug-2024

Summary

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Official Symbol
CNN3provided by VGNC
Official Full Name
calponin 3provided by VGNC
Primary source
VGNC:VGNC:16672
See related
Ensembl:ENSECAG00000020188
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (67136500..67162924)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene TLC domain containing 4 Neighboring gene ALG14 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 44 member 3 Neighboring gene uncharacterized LOC111773582 Neighboring gene uncharacterized LOC111773583 Neighboring gene KATNB1-like protein 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calponin-3
Names
calponin-3-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    67136500..67162924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001490827.6 → XP_001490877.1  calponin-3

    See identical proteins and their annotated locations for XP_001490877.1

    UniProtKB/TrEMBL
    F7DCH4
    Related
    ENSECAP00000017757.2, ENSECAT00000021552.4
    Conserved Domains (3) summary
    COG5199
    Location:16 → 188
    SCP1; Calponin [Cytoskeleton]
    pfam00307
    Location:27 → 125
    CH; Calponin homology (CH) domain
    pfam00402
    Location:164 → 187
    Calponin; Calponin family repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials