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CLDN2 claudin 2 [ Equus caballus (horse) ]

Gene ID: 100054776, updated on 17-Aug-2024

Summary

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Official Symbol
CLDN2provided by VGNC
Official Full Name
claudin 2provided by VGNC
Primary source
VGNC:VGNC:16591
See related
Ensembl:ENSECAG00000003417
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CLDN2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (88479416..88486838)

Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111771648 Neighboring gene ripply transcriptional repressor 1 Neighboring gene MORC family CW-type zinc finger 4 Neighboring gene RNA binding motif protein 41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009175.3 Chromosome X Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009175.3 Reference EquCab3.0 Primary Assembly

    Range
    88479416..88486838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023633902.1 → XP_023489670.1  claudin-2 isoform X1

    UniProtKB/TrEMBL
    F6YS83
    Related
    ENSECAP00000071874.1, ENSECAT00000115068.1
    Conserved Domains (1) summary
    cl21598
    Location:23 → 181
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_014729066.2 → XP_014584552.1  claudin-2 isoform X2

    Conserved Domains (1) summary
    cl21598
    Location:23 → 158
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  3. XM_014729063.2 → XP_014584549.1  claudin-2 isoform X1

    UniProtKB/TrEMBL
    F6YS83
    Conserved Domains (1) summary
    cl21598
    Location:23 → 181
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  4. XM_014729065.2 → XP_014584551.1  claudin-2 isoform X1

    UniProtKB/TrEMBL
    F6YS83
    Related
    ENSECAP00000073658.1, ENSECAT00000099657.1
    Conserved Domains (1) summary
    cl21598
    Location:23 → 181
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
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Research Materials