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LOC100052108 embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [ Equus caballus (horse) ]

Gene ID: 100052108, updated on 15-Aug-2024

Summary

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Gene symbol
LOC100052108
Gene description
embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein
See related
Ensembl:ENSECAG00000022488
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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Genomic context

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Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (7995098..8017503, complement)

Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene zinc finger protein 568 Neighboring gene uncharacterized LOC111775424 Neighboring gene uncharacterized LOC111775425 Neighboring gene embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009153.3 Chromosome 10 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009153.3 Reference EquCab3.0 Primary Assembly

    Range
    7995098..8017503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005596219.3 → XP_005596276.1  embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

    See identical proteins and their annotated locations for XP_005596276.1

    UniProtKB/TrEMBL
    A0A9L0S1E8, F7AX17
    Conserved Domains (1) summary
    pfam02586
    Location:4 → 259
    SRAP; SOS response associated peptidase (SRAP)

  2. XM_014733455.2 → XP_014588941.1  embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

    UniProtKB/TrEMBL
    A0A9L0S1E8, F7AX17
    Related
    ENSECAP00000019995.2, ENSECAT00000024089.3
    Conserved Domains (1) summary
    pfam02586
    Location:4 → 259
    SRAP; SOS response associated peptidase (SRAP)

  3. XM_023651350.1 → XP_023507118.1  embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

    UniProtKB/TrEMBL
    A0A9L0S1E8, F7AX17
    Related
    ENSECAP00000068712.1, ENSECAT00000094635.1
    Conserved Domains (1) summary
    pfam02586
    Location:4 → 259
    SRAP; SOS response associated peptidase (SRAP)
Nucleotide Protein
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