U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

runx2b RUNX family transcription factor 2b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100049495, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
runx2b
Gene description
RUNX family transcription factor 2b
See related
EnsemblRapid:ENSORLG00000010169
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
cbfa1; rnt-1; runx2
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 24
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 24 NC_019882.2 (3138204..3183949)
102 previous assembly ASM31367v1 (GCF_000313675.1) 24 NC_019882.1 (2422364..2469299)

Chromosome 24 - NC_019882.2Genomic Context describing neighboring genes Neighboring gene opsin-5-like Neighboring gene methylmalonyl CoA mutase Neighboring gene chloride intracellular channel 5b Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Temporal and spatial patterns of cbfal expression during embryonic development in the teleost, Oryzias latipes. Inohaya K, et al. Dev Genes Evol, 2000 Nov. PMID 11180808
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
runt-related transcription factor 2
Names
RUNX family transcription factor 2
core binding factor alpha1 subunit ptotein
runt related transcription factor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104850.1 → NP_001098320.1  runt-related transcription factor 2

    See identical proteins and their annotated locations for NP_001098320.1

    Status: PROVISIONAL

    Source sequence(s)
    AB037888
    UniProtKB/TrEMBL
    A0A3P9I1Z3, A0A3P9JWC2, H2M2V0, Q9DEF2
    Related
    ENSORLP00000012748.2, ENSORLT00000012749.3
    Conserved Domains (3) summary
    pfam00853
    Location:75 → 196
    Runt; Runt domain
    pfam08504
    Location:369 → 461
    RunxI; Runx inhibition domain
    cl26464
    Location:157 → 428
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019882.2 Reference ASM223467v1 Primary Assembly

    Range
    3138204..3183949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023952691.1 → XP_023808459.1  runt-related transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A3P9I1Z3, A0A3P9JWC2, H2M2V0, Q9DEF2
    Conserved Domains (3) summary
    pfam00853
    Location:75 → 196
    Runt; Runt domain
    pfam08504
    Location:369 → 461
    RunxI; Runx inhibition domain
    cl26464
    Location:157 → 428
    Atrophin-1; Atrophin-1 family

  2. XM_011491362.3 → XP_011489664.1  runt-related transcription factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A3P9I236, A0A3P9JWJ9, H2M2V2
    Related
    ENSORLP00000012750.3, ENSORLT00000012751.3
    Conserved Domains (2) summary
    pfam00853
    Location:35 → 156
    Runt; Runt domain
    pfam08504
    Location:329 → 421
    RunxI; Runx inhibition domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.