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rnf38.L ring finger protein 38 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037019, updated on 18-Sep-2024

Summary

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Official Symbol
rnf38.L
Official Full Name
ring finger protein 38 L homeolog
Primary source
Xenbase:XB-GENE-1015613
Locus tag
XELAEV_18006546mg
See related
EnsemblRapid:ENSXLAG00005022307
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rnf38
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Genomic context

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See rnf38.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (119434171..119582649)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (107430067..107453700)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene maternal embryonic leucine zipper kinase L homeolog Neighboring gene cysteine-rich protein 1 Neighboring gene uncharacterized LOC121393652 Neighboring gene protein kinase C delta type-like Neighboring gene protein kinase C delta type-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    119434171..119582649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041562685.1 → XP_041418619.1  E3 ubiquitin-protein ligase RNF38 isoform X1

    UniProtKB/TrEMBL
    A0A8J1KQW2
    Conserved Domains (1) summary
    cd16472
    Location:680 → 724
    RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

  2. XM_041562691.1 → XP_041418625.1  E3 ubiquitin-protein ligase RNF38 isoform X2

    UniProtKB/TrEMBL
    A0A8J1KMT6
    Related
    ENSXLAP00005065680.1, ENSXLAT00005067196.1
    Conserved Domains (1) summary
    cd16472
    Location:678 → 722
    RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

  3. XM_041562694.1 → XP_041418628.1  E3 ubiquitin-protein ligase RNF38 isoform X3

    UniProtKB/TrEMBL
    A0A8J1KPG4
    Conserved Domains (1) summary
    cd16472
    Location:670 → 714
    RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

  4. XM_041562698.1 → XP_041418632.1  E3 ubiquitin-protein ligase RNF38 isoform X4

    UniProtKB/TrEMBL
    A0A8J1KMT3
    Conserved Domains (1) summary
    cd16472
    Location:668 → 712
    RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

  5. XM_018256545.2 → XP_018112034.1  E3 ubiquitin-protein ligase RNF38 isoform X5

    UniProtKB/TrEMBL
    A0A8J0UXU6, A1L3I9
    Related
    ENSXLAP00005065659.1, ENSXLAT00005067175.1

  6. XM_018256556.2 → XP_018112045.1  E3 ubiquitin-protein ligase RNF38 isoform X6

    UniProtKB/TrEMBL
    A0A8J0UYT5, A0A974E0R7
Nucleotide Protein Strain
Heading Accession and Version

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