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AFAP1 actin filament associated protein 1 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100014539, updated on 3-Apr-2024

Summary

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Gene symbol
AFAP1
Gene description
actin filament associated protein 1
See related
Ensembl:ENSMODG00000003012
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 6 NC_077232.1 (85724431..85955835)
103 previous assembly MonDom5 (GCF_000002295.2) 5 NC_008805.1 (226294931..226526064, complement)

Chromosome 6 - NC_077232.1Genomic Context describing neighboring genes Neighboring gene SH3 domain and tetratricopeptide repeats 1 Neighboring gene actin binding LIM protein family member 2 Neighboring gene uncharacterized LOC103104773 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC103103597 Neighboring gene sortilin related VPS10 domain containing receptor 2 Neighboring gene uncharacterized LOC103101855 Neighboring gene E3 ubiquitin-protein ligase NRDP1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH2 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077232.1 Reference mMonDom1.pri

    Range
    85724431..85955835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007496781.3 → XP_007496843.1  actin filament-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_007496843.1

    UniProtKB/TrEMBL
    A0A5F8G4B5, A0A5F8G8B8
    Related
    ENSMODP00000043679.1
    Conserved Domains (4) summary
    cd13306
    Location:143 → 249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:346 → 446
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    pfam00169
    Location:155 → 247
    PH; PH domain
    pfam10211
    Location:633 → 704
    Ax_dynein_light; Axonemal dynein light chain

  2. XM_001364753.4 → XP_001364790.1  actin filament-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    F6Q3E8
    Related
    ENSMODP00000003656.4
    Conserved Domains (4) summary
    cd13306
    Location:143 → 249
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:346 → 446
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    pfam00169
    Location:155 → 247
    PH; PH domain
    pfam10211
    Location:544 → 615
    Ax_dynein_light; Axonemal dynein light chain

  3. XM_056802392.1 → XP_056658370.1  actin filament-associated protein 1 isoform X1

  4. XM_056802394.1 → XP_056658372.1  actin filament-associated protein 1 isoform X1

  5. XM_056802393.1 → XP_056658371.1  actin filament-associated protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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