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MonDom5

Organism name:
Monodelphis domestica (gray short-tailed opossum)
BioSample:
SAMN02953611
BioProject:
PRJNA12561
Submitter:
The Genome Sequencing Platform, The Genome Assembly Team
Date:
2007/01/25
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
n/a
RefSeq assembly accession:
GCF_000002295.2 (latest)
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AAFR03

IDs: 237648 [UID] 237648 [RefSeq]

See Genome Information for Monodelphis domestica

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length3,598,443,077
Total ungapped length3,499,615,818
Gaps between scaffolds209
Number of scaffolds5,223
Scaffold N5059,809,810
Scaffold L5018
Number of contigs72,674
Contig N50108,014
Contig L509,450
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)72,674

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000368.1=NC_008801.10
Chromosome 2CM000369.1=NC_008802.10
Chromosome 3CM000370.1=NC_008803.10
Chromosome 4CM000371.1=NC_008804.10
Chromosome 5CM000372.1=NC_008805.10
Chromosome 6CM000373.1=NC_008806.10
Chromosome 7CM000374.1=NC_008807.10
Chromosome 8CM000375.1=NC_008808.10
Chromosome XCM000376.1=NC_008809.10
unplacedn/an/an/a5,006

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,598,425,9985,2223,499,598,73959,809,81067,451209
Chromosome 1748,055,16127733,412,98781,289,63113,55826
Chromosome 2541,556,28332527,981,72661,081,15010,76931
Chromosome 3527,952,10232515,087,230127,781,0679,72131
Chromosome 4435,153,69338422,697,47144,328,0328,27237
Chromosome 5304,825,32411298,042,89381,513,5064,96810
Chromosome 6292,091,73613284,524,57357,905,5025,32912
Chromosome 7260,857,92814254,715,62035,325,3584,00113
Chromosome 8312,544,90222303,158,76432,787,3575,53922
Chromosome X79,335,9092772,972,1643,685,9841,94027
unplaced96,052,9605,00687,005,31179,3563,3540
MoleculeTotal
Length
Mitochondrion MT17,079
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