Molecular Pathogenesis
SDHA, SDHB, SDHC, and SDHD are four nuclear genes responsible for hereditary PGL/PCC syndromes. They encode the four subunits of the mitochondrial enzyme succinate dehydrogenase (SDH). SDH catalyzes the conversion of succinate to fumarate in the Krebs cycle and serves as complex II of the electron transport chain. A fifth nuclear gene, SDHAF2 (also known as SDH5), encodes a protein that appears to be necessary for flavination of another SDH subunit, SDHA, as well as stabilization of the SDH complex. These five genes are collectively known as the SDHx genes.
SDHA, SDHAF2, SDHB, SDHC, and SDHD are tumor suppressor genes. Somatic second-hit variants in tumors include gross chromosomal rearrangements, recombination, single-nucleotide variants, or epigenetic changes that result in allelic inactivation.
The common neural crest derivation of skull base and neck paragangliomas, sympathetic extra-adrenal paragangliomas, and pheochromocytomas characterize this syndrome.
Inactivation of SDHA, SDHB, SDHC, or SDHD may cause the generation of a pseudohypoxic cellular state due to elevation of cellular succinate concentrations and/or the increased production of reactive oxygen species. Increased succinate in the cell can competitively inhibit the 2-oxoglutarate-dependent dioxygenases such as HIF prolyl-hydroxylases and histone and/or DNA demethylases. This can lead to increases in HIF-1α stimulating hypoxia pathways and leads to epigenetic modifications such as hypermethylation [Pollard et al 2005, Letouzé et al 2013].
Much less is known about the role of TMEM127 and MAX in PGL/PCC tumorigenesis. TMEM127 is a transmembrane-spanning protein involved in regulating the mTOR pathway. MAX is a transcription factor that heterodimerizes with MYC to regulate transcription of downstream genes involved in tumorigenesis.
MAX
Gene structure.
MAX consists of five exons and produces a 2,068-bp transcript (reference sequence NM_002382.3). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Missense, nonsense, and splicing variants and intragenic deletions have all been reported in individuals with hereditary PGL/PCC.
Normal gene product.
MAX encodes a 160-amino-acid protein that is a dimerization component of the MYC-MAX-MXD1 network of basic helix-loop-helix leucine zipper (bHLHZ) transcription factors that regulate cell proliferation, differentiation, and apoptosis.
Abnormal gene product. Pathogenic variants in MAX result in absence or dysfunction of its protein product, resulting in dysregulation of a number of genes involved in cell growth and cell death.
SDHA
Gene structure.
SDHA comprises 15 exons and is approximately 39 kb in length. It encodes a 2,390-bp transcript (reference sequence NM_004168.3). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Multiple missense and nonsense pathogenic variants have been identified in SDHA. A database of normal and pathogenic variants for the SDH subunit genes is maintained by the Leiden University Medical Center (see Table A).
Normal gene product.
SDHA encodes a flavoprotein subunit of succinate-ubiquinone oxidoreductase.
Abnormal gene product. Pathogenic variants in SDHA result in reduced or absent succinate dehydrogenase function because of loss or dysfunction of the affected subunit, or failure of the SDH heterotetramer to assemble.
SDHAF2
Gene structure.
SDHAF2 (also known as SDH5) consists of four exons and produces a 501-bp transcript (reference sequence NM_017841.1). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. See Table 5. Affected individuals from a Dutch family described by van Baars et al [1982] were found to have a single-nucleotide change (c.232G>A) in exon 2 in SDHAF2. This resulted in a p.Gly78Arg alteration in the most conserved region of the protein and is believed to be a founder variant [Hensen et al 2012]. Of note, c.232G>C (p.Gly78Arg) has also been reported [Piccini et al 2012]. Additional loss-of-function variants have been reported in SDHAF2.
Table 5.
SDHAF2 Variants Discussed in This GeneReview
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DNA Nucleotide Change | Predicted Protein Change | Reference Sequences |
---|
c.232G>A | p.Gly78Arg |
NM_017841.1
NP_060311.1
|
c.232G>C | p.Gly78Arg |
Variants listed in the table have been provided by the authors. GeneReviews staff have not independently verified the classification of variants.
GeneReviews follows the standard naming conventions of the Human Genome Variation Society (varnomen.hgvs.org). See Quick Reference for an explanation of nomenclature.
Normal gene product.
SDHAF2 encodes succinate dehydrogenase assembly factor 2, composed of 166 amino acid residues.
Abnormal gene product. The SDHAF2 protein appears to be required for SDHA flavination, stability of the SDH complex, and therefore the function of the SDH enzyme. Evidence suggests that the c.232G>A pathogenic variant in exon 2 of SDHAF2 destabilizes the protein, impairing its interaction with SDHA.
SDHB
Gene structure.
SDHB comprises eight exons and is approximately 40 kb in length. It encodes an 1,162-bp transcript (reference sequence NM_003000.2). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Nonsense, missense, splice site variants, intragenic deletions and insertions, and whole-gene SDHB deletions have been reported in individuals/pedigrees affected with hereditary PGL/PCC syndromes. More than 100 pathogenic sequence variants have been described for SDHB. A database of normal and pathogenic variants for the SDH subunit genes is maintained by the Leiden University Medical Center (see Table A). SDHB variants are predominantly found in exons 1-7.
Large SDHB deletions have been reported, most commonly involving SDHB exon 1, but also other multiexon deletions and whole-gene deletions [Cascón et al 2006, Burnichon et al 2009, Neumann et al 2009, Solis et al 2009, Buffet et al 2012, Rattenberry et al 2013].
Normal gene product.
SDHB encodes succinate dehydrogenase (ubiquinone) iron-sulfur subunit, a 280-amino-acid protein (reference sequence NP_002991.2).
Abnormal gene product. Pathogenic variants in SDHB result in reduced or absent succinate dehydrogenase function because of loss or dysfunction of the affected subunit, or failure of the SDH heterotetramer to assemble.
SDHC
Gene structure.
SDHC has six exons and is more than 35 kb in length. It codes for a 2,858-bp transcript (reference sequence NM_003001.3). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Nonsense, missense, splice site, regulatory, and whole-exon-deletion SDHC pathogenic variants have been reported in individuals and pedigrees affected with hereditary PGL/PCC syndromes.
Normal gene product.
SDHC encodes the succinate dehydrogenase cytochrome b560 subunit, a 169-amino-acid protein (reference sequence NP_002992.1).
Abnormal gene product. Pathogenic variants in SDHC result in reduced or absent succinate dehydrogenase function because of loss or dysfunction of the affected subunit or failure of the SDH heterotetramer to assemble.
SDHD
Gene structure.
SDHD consists of four exons and produces a 1,313-bp transcript (reference sequence NM_003002.1). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Nonsense, missense, and splice site variants, intragenic insertions and deletions, and a whole-gene deletion have been reported in SDHD in individuals and pedigrees with hereditary PGL/PCC syndromes. More than 70 pathogenic sequence variants have been described for SDHD (see Table A). SDHD pathogenic variants are distributed throughout the four exons of the gene.
A database of normal and pathogenic variants for the SDH subunit genes is maintained by the Leiden University Medical Center (see Table A).
Normal gene product.
SDHD encodes succinate dehydrogenase (ubiquinone) cytochrome b small subunit, a 159-amino-acid protein (reference sequence NP_002993.1).
Abnormal gene product. Pathogenic variants in SDHD result in reduced or absent succinate dehydrogenase function because of loss or dysfunction of the affected subunit or failure of the SDH heterotetramer to assemble.
TMEM127
Gene structure.
TMEM127 consists of four exons and produces a 6,266-bp transcript (reference sequence NM_017849.3). For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Missense, nonsense, and splicing variants and intragenic deletions have all been reported in individuals with hereditary PGL/PCC syndromes.
Normal gene product.
TMEM127 encodes a 238-amino-acid protein that regulates mTORC1, a member of the phosphatidylinositol-3-kinase (PI3K)-related kinase family, through inhibition. This regulation promotes cell growth, angiogenesis, cell survival, and protein translation.
Abnormal gene product. Pathogenic variants in TMEM127 result in absence or dysfunction of its protein product, causing increased phosphorylation of mTORC1 and affecting cell growth.