6WYV: E. coli 50S ribosome bound to compounds 47 and VS1

PDB ID: 6WYVDownload
MMDB ID: 189098
PDB Deposition Date: 2020/5/13
Updated in MMDB: 2020/10
Experimental Method:
electron microscopy
Resolution: 2.75  Å
Source Organism:
Similar Structures:
Biological Unit for 6WYV: octameric; determined by author
Molecular Components in 6WYV
Label Count Molecule
Proteins (5 molecules)
1
50S Ribosomal Protein L2
(Gene symbol: rplB)
Molecule annotation
1
50S Ribosomal Protein L15
Molecule annotation
1
50S Ribosomal Protein L4
Molecule annotation
1
50S Ribosomal Protein L3
(Gene symbol: rplC)
Molecule annotation
1
50S Ribosomal Protein L13
Molecule annotation
Nucleotides(2 molecules)
1
23S Ribosomal RNA
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
C
1
VIRGINIAMYCIN S1
1
1
(3R,4R,5E,10E,12E,14S,16R,26aR)-16-fluoro-14-hydroxy-12-methyl-3-(propan-2-yl)-4-(prop-2-en-1-yl)-3,4,8,9,14,15,16,17,24,25,26,26a-dodecahydro-1H,7H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosine-1,7,22-trione(3R,4R,5E,10E,12E,14S,16R,26aR)-16-fluoro-14-hydroxy-12-methyl-3-(propan-2-yl)-4-(prop-2-en-1-yl)-3,4,8,9,14,15,16,17,24,25,26,26a-dodecahydro-1H,7H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosine-1,7,22-trione
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303