1D5Y,1JYH,2KCU,3LUR


Conserved Protein Domain Family
AraC_E_bind
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smart00871: AraC_E_bind 
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Bacterial transcription activator, effector binding domain
This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Links
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Statistics
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PSSM-Id: 214874
Aligned: 314 rows
Threshold Bit Score: 36.3004
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1D5Y_A       125 EHKFVTLE--DTPLIGVTQSYSCSL-EQISDFrhEMRYQFWHDFLGNAPTIp----pVLYGLN-ETRPSQDKD---DEQE 193 Escherichia coli
YP_428430      3 aldvrpLP--AMIFASLRHIGPYGE-A--GET--FRKITDWAVSEGV--MTpe---tQILGLS-YDDPKTTPA---EILR 66  Rhodospirillum ...
NP_767118    102 fgletTLE--SRKVVMVKGTANW-D-SAFDTL--VDAFKALNTLLDKQGIKha---gNSMIVY-TS----TDD---TGFT 164 Bradyrhizobium ...
YP_319382     93 fgEEHTLT--PKTVLSLRNTATW-D-TAFETL--IDSFKSLAALLDKRGVKpa---gNMMIVY-TS----TDD---NGFS 155 Nitrobacter win...
NP_945602    111 fgeesTLE--PKTVVILKGKANW-D-NAFDSL--MDAFKSLTALLDKQGIApn---gNPMIVY-TS----TDD---AGFT 173 Rhodopseudomona...
YP_509179    116 EFTRKTLP--AQPYIYVERECAYGP-EIADAM--GSAFGEIFAFVGQSGITpl---sMPMSVYtGMDPKIL------RFR 181 Jannaschia sp. ...
YP_779261    125 fgEEIVLT--AKSVVILKGSATW-D-NAFESL--MESLKTLTALLDKQDIKsa---gNMMIVY-TS----TDD---SGFT 187 Rhodopseudomona...
YP_001415325  77 aPQEITLS--PVPVLTLTGSATWEE-A-FEKL--VTSVKQADAELKRLGLTra---gDTFIVY-TSSDDLS-------FE 139 Xanthobacter au...
YP_001253427  58 KVIIMDLE--EEPILYSDKNTLKGd--tTNEE--WSSYYEEFFKKTELRGp------AFIGSV-IDKNDLLS----GKFG 120 Clostridium bot...
ZP_07999097  116 GIKLAEHPalTFQYFPKRAISYLYfdkPVDLM--EEGDDIYLKDKETLSSQsienngFFTGDI-GTIVDMESlkqeGPVK 192 Bacillus sp. BT...

1D5Y_A       194 VFYTTALAQD--QAD-GYVLtgHPVMLQGGEYVMFTYEGLGTg-VQEFILTVYGTCMPMLNLTRrKGQDIERYYPAEDak 269 Escherichia coli
YP_428430     67 YDACVTLKTP--VAL-PPGM--QLMALPACSWVMMTHKG-PYetMGETFTKLYAALAEHPTLVPiATGAI-EIYVNDP-- 137 Rhodospirillum ...
NP_767118    165 FLAEIPVEQD--PKNlPKDM--SVGKSPEGKALKFVHRG-SYdnMDNTYEAITNHLDDKRLEAKdT---FIEEYLTDP-- 234 Bradyrhizobium ...
YP_319382    156 FLAEIPVDQE--IKDlPKNM--SMGKSPEGKALKFVHRG-SYdnMDNTYEAITNTLDDRKLEAKdT---FIEEYTTDP-- 225 Nitrobacter win...
NP_945602    174 FQAQIPVPQE--PKNlGKSM--SIGKSPDGKALKFVHRG-SYdnMDNTYEAITNFLDDKKLEAKdT---FIEEYMTDP-- 243 Rhodopseudomona...
YP_509179    182 GGVIVSTDDA--AKA-EGAI--KSDALPAGDVMHVIHKG-PYdtMNLTHKALWEHLEAQG---TpGTMPTWEIYTDDP-- 250 Jannaschia sp. ...
YP_779261    188 YQAEIPAERE--PKNlTKAM--SYGKSPEGRSLKFVHRG-SYdnMDNTYEAITNHLDDKKLEAKdT---FIEEYITDP-- 257 Rhodopseudomona...
YP_001415325 140 YEIQVPFSGTttQKP-GDGM--KLGGSHAGKVLKFTHTGSFAd-MDNTYEQIANYLDEKNVEQTdMY---IEQYRTDI-- 210 Xanthobacter au...
YP_001253427 121 RIDRLFVRMD--KP--------EATMKPAGLYAVTYYKGS-YeaIVDFYEVFMRKIKEQGLIi---CGDAYEEYLLNV-- 184 Clostridium bot...
ZP_07999097  193 YIGVFELLHE--ED--------SEDYLNEGLYASYPHIGP-YedIRKSYQLVLSQLKEKEYEla-gIPVEISFLDDAV-- 258 Bacillus sp. BT...

1D5Y_A       270 AG-DRPINLRCELLIPIR 286 Escherichia coli
YP_428430    138 AT-TAPADLITELGVAVl 154 Rhodospirillum rubrum ATCC 11170
NP_767118    235 LK-TAEDKLVINVFVPLK 251 Bradyrhizobium japonicum USDA 110
YP_319382    226 LK-TEEDSLVIDVYVPLK 242 Nitrobacter winogradskyi Nb-255
NP_945602    244 LK-TAEDKLVINVYVPMK 260 Rhodopseudomonas palustris CGA009
YP_509179    251 GD-TAPEDLRTEIFctia 267 Jannaschia sp. CCS1
YP_779261    258 LK-TAEDKLVINVYVPLK 274 Rhodopseudomonas palustris BisA53
YP_001415325 211 VS-GSPEALEIDILVPVp 227 Xanthobacter autotrophicus Py2
YP_001253427 185 LAtQNSMDFVTKISVAVK 202 Clostridium botulinum A str. ATCC 3502
ZP_07999097  259 IK--ESARYVTLIQIPVT 274 Bacillus sp. BT1B_CT2
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