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Taxonomy browser (Rhodospirillum rubrum ATCC 11170)

Rhodospirillum rubrum ATCC 11170

Taxonomy ID: 269796 (for references in articles please use NCBI:txid269796)
Scientific name: Rhodospirillum rubrum ATCC 11170
equivalent: Rhodospirillum rubrum str. ATCC 11170
equivalent: Rhodospirillum rubrum strain ATCC 11170
NCBI BLAST® name: a-proteobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Rhodospirillum rubrum S1
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum; Rhodospirillum rubrum
   Entrez records   
Database name Direct links
Nucleotide 181
Protein 12,084
Structure 17
Genome 1
GEO Datasets 9
PubMed Central 12
Gene 3,921
Identical Protein Groups 3,912
Bio Project 2
Bio Sample 1
Bio Systems 226
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentMunk AC et al. (2011)
Munk, A.C., Copeland, A., Lucas, S., Lapidus, A., Del Rio, T.G., Barry, K., Detter, J.C., Hammon, N., Israni, S., Pitluck, S., Brettin, T., Bruce, D., Han, C., Tapia, R., Gilna, P., Schmutz, J., Larimer, F., Land, M., Kyrpides, N.C., Mavromatis, K., Richardson, P., Rohde, M., Goker, M., Klenk, H.-P., Zhang, Y., Roberts, G.P., Reslewic, S., and Schwartz, D.C. "Complete genome sequence of Rhodospirillum rubrum type strain (S1)." Stand. Genomic Sci. (2011) 4:293-302.


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
13 65,835 65,848
Totals per type
13 65,835 65,848

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rhodospirillum rubrum meta-databases BacDive
Rhodospirillum rubrumATCC 11170 organism-specific BioCyc
GOLD: Go0000332 organism-specific Genomes On Line Database
637000241: Rhodospirillum rubrum S1, ATCC 11170 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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