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    BPTF bromodomain PHD finger transcription factor [ Sorex araneus (European shrew) ]

    Gene ID: 101544553, updated on 8-Mar-2024

    Summary

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    Gene symbol
    BPTF
    Gene description
    bromodomain PHD finger transcription factor
    See related
    EnsemblRapid:ENSSARG00000002933
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorex araneus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 3 NC_073304.1 (226645488..226787932, complement)
    101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545970.1 (2089528..2204471)

    Chromosome 3 - NC_073304.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene chromosome 3 C17orf58 homolog Neighboring gene nucleolar protein 11 Neighboring gene U1 spliceosomal RNA Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NURF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleosome-remodeling factor subunit BPTF

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mSorAra2.pri

    Genomic

    1. NC_073304.1 Reference mSorAra2.pri

      Range
      226645488..226787932 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055130748.1 → XP_054986723.1  nucleosome-remodeling factor subunit BPTF isoform X7

      Related
      ENSSARP00000002698.2, ENSSART00000002980.2

    2. XM_055130747.1 → XP_054986722.1  nucleosome-remodeling factor subunit BPTF isoform X6

      Related
      ENSSARP00000030697.1, ENSSART00000042172.1

    3. XM_055130746.1 → XP_054986721.1  nucleosome-remodeling factor subunit BPTF isoform X5

      Related
      ENSSARP00000036739.1, ENSSART00000032905.1

    4. XM_055130743.1 → XP_054986718.1  nucleosome-remodeling factor subunit BPTF isoform X2

    5. XM_055130749.1 → XP_054986724.1  nucleosome-remodeling factor subunit BPTF isoform X8

    6. XM_055130745.1 → XP_054986720.1  nucleosome-remodeling factor subunit BPTF isoform X4

      Related
      ENSSARP00000032811.1, ENSSART00000029995.1

    7. XM_055130742.1 → XP_054986717.1  nucleosome-remodeling factor subunit BPTF isoform X1

      Related
      ENSSARP00000026068.1, ENSSART00000025664.1

    8. XM_055130751.1 → XP_054986726.1  nucleosome-remodeling factor subunit BPTF isoform X9

    9. XM_055130744.1 → XP_054986719.1  nucleosome-remodeling factor subunit BPTF isoform X3

    Nucleotide Protein
    Heading Accession and Version

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