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    tut1 terminal uridylyl transferase 1, U6 snRNA-specific [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101173262, updated on 11-Apr-2024

    Summary

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    Gene symbol
    tut1
    Gene description
    terminal uridylyl transferase 1, U6 snRNA-specific
    See related
    EnsemblRapid:ENSORLG00000004342
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 19 NC_019877.2 (4398002..4407245, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 19 NC_019877.1 (2775513..2785209, complement)

    Chromosome 19 - NC_019877.2Genomic Context describing neighboring genes Neighboring gene MAGUK p55 scaffold protein 2b Neighboring gene peptide Y Neighboring gene marker of proliferation Ki-67 Neighboring gene retinoic acid receptor, alpha a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A) RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    speckle targeted PIP5K1A-regulated poly(A) polymerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019877.2 Reference ASM223467v1 Primary Assembly

      Range
      4398002..4407245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004080230.4 → XP_004080278.1  speckle targeted PIP5K1A-regulated poly(A) polymerase

      UniProtKB/TrEMBL
      A0A3P9ID74, H2LHH7
      Related
      ENSORLP00000005439.2, ENSORLT00000005440.3
      Conserved Domains (6) summary
      cd05402
      Location:179 → 328
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      smart00451
      Location:12 → 39
      ZnF_U1; U1-like zinc finger
      COG0724
      Location:42 → 153
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      COG5260
      Location:124 → 521
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      cd12279
      Location:52 → 125
      RRM_TUT1; RNA recognition motif in speckle targeted PIP5K1A-regulated poly(A) polymerase (Star-PAP) and similar proteins
      pfam03828
      Location:422 → 491
      PAP_assoc; Cid1 family poly A polymerase
    Nucleotide Protein
    Heading Accession and Version

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