PPP1R10 protein phosphatase 1 regulatory subunit 10 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: PPP1R10provided by VGNC
Official Full Name: protein phosphatase 1 regulatory subunit 10provided by VGNC
Primary source: VGNC:VGNC:44876
See related: Ensembl:ENSCAFG00845007180
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	12	NC_051816.1 (560665..578919, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	12	NC_006594.4 (554183..572419, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	12	NC_049233.1 (556330..574575, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	12	NC_049272.1 (417222..435469, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	12	NC_049753.1 (486514..504753, complement)

Chromosome 12 - NC_051816.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH18166 (e-PCR)
- UniSTS:18456

D17Ertd808e (e-PCR), detects polymorphism
- UniSTS:167227

D6S484E (e-PCR)
- UniSTS:473186

A007C28 (e-PCR)
- UniSTS:19347

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: serine/threonine-protein phosphatase 1 regulatory subunit 10

Names: protein phosphatase 1, regulatory (inhibitor) subunit 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051816.1 Reference ROS_Cfam_1.0

Range

560665..578919 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038682893.1 → XP_038538821.1 serine/threonine-protein phosphatase 1 regulatory subunit 10

UniProtKB/TrEMBL

A0A8C0MKD5, A0A8C0SPG3, A0A8I3RV83

Related

ENSCAFP00845009930.1, ENSCAFT00845012734.1

Conserved Domains (3) summary

PHA03247
Location:227 → 420

PHA03247; large tegument protein UL36; Provisional

pfam18044
Location:910 → 932

zf-CCCH_4; CCCH-type zinc finger

cl00146
Location:102 → 146

TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Alternate UMICH_Zoey_3.1

Genomic

NC_049272.1 Alternate UMICH_Zoey_3.1

Range

417222..435469 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038491243.1 → XP_038347171.1 serine/threonine-protein phosphatase 1 regulatory subunit 10

Conserved Domains (3) summary

PHA03247
Location:227 → 420

PHA03247; large tegument protein UL36; Provisional

pfam18044
Location:910 → 932

zf-CCCH_4; CCCH-type zinc finger

cl00146
Location:102 → 146

TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049753.1 Alternate UNSW_CanFamBas_1.0

Range

486514..504753 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038617301.1 → XP_038473229.1 serine/threonine-protein phosphatase 1 regulatory subunit 10

Conserved Domains (3) summary

PHA03247
Location:227 → 420

PHA03247; large tegument protein UL36; Provisional

pfam18044
Location:910 → 932

zf-CCCH_4; CCCH-type zinc finger

cl00146
Location:102 → 146

TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049233.1 Alternate UU_Cfam_GSD_1.0

Range

556330..574575 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038553408.1 → XP_038409336.1 serine/threonine-protein phosphatase 1 regulatory subunit 10

UniProtKB/TrEMBL

A0A8C0MKD5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

554183..572419 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_843307.6 → XP_848400.1 serine/threonine-protein phosphatase 1 regulatory subunit 10

See identical proteins and their annotated locations for XP_848400.1

UniProtKB/TrEMBL

A0A8C0MKD5, A0A8C0SPG3, A0A8I3RV83

Conserved Domains (3) summary

PHA03247
Location:227 → 420

PHA03247; large tegument protein UL36; Provisional

pfam18044
Location:910 → 932

zf-CCCH_4; CCCH-type zinc finger

cl00146
Location:102 → 146

TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme