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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001376195.1 → NP_001363124.1 serine/threonine-protein phosphatase 1 regulatory subunit 10
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longest transcript. Variants 1 and 3 both encode the same protein.
- Source sequence(s)
-
AL662800
- Consensus CDS
-
CCDS4681.1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
- Conserved Domains (3) summary
-
- TIGR01385
Location:102 → 215
- TFSII; transcription elongation factor S-II
- pfam18044
Location:910 → 932
- zf-CCCH_4; CCCH-type zinc finger
- cl00146
Location:102 → 146
- TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
-
NM_002714.4 → NP_002705.2 serine/threonine-protein phosphatase 1 regulatory subunit 10
Status: REVIEWED
- Source sequence(s)
-
AJ544537, BC150310
- Consensus CDS
-
CCDS4681.1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
- Related
- ENSP00000365694.2, ENST00000376511.7
- Conserved Domains (3) summary
-
- TIGR01385
Location:102 → 215
- TFSII; transcription elongation factor S-II
- pfam18044
Location:910 → 932
- zf-CCCH_4; CCCH-type zinc finger
- cl00146
Location:102 → 146
- TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
RNA
-
NR_072994.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL662800
-
NR_164780.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL662800
-
NR_164781.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL662800
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
30600413..30617243 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011514722.2 → XP_011513024.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
- Conserved Domains (3) summary
-
- TIGR01385
Location:102 → 215
- TFSII; transcription elongation factor S-II
- pfam18044
Location:910 → 932
- zf-CCCH_4; CCCH-type zinc finger
- cl00146
Location:102 → 146
- TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
2080137..2098356 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054329833.1 → XP_054185808.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054329834.1 → XP_054185809.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
Reference GRCh38.p14 ALT_REF_LOCI_3
Genomic
-
NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3
- Range
-
1856243..1874462 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330317.1 → XP_054186292.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054330318.1 → XP_054186293.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
Reference GRCh38.p14 ALT_REF_LOCI_4
Genomic
-
NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4
- Range
-
1910642..1928854 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330614.1 → XP_054186589.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054330615.1 → XP_054186590.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
Reference GRCh38.p14 ALT_REF_LOCI_5
Genomic
-
NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5
- Range
-
1944460..1962680 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330834.1 → XP_054186809.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054330835.1 → XP_054186810.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
Reference GRCh38.p14 ALT_REF_LOCI_6
Genomic
-
NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6
- Range
-
1855502..1873720 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331094.1 → XP_054187069.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054331095.1 → XP_054187070.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
Reference GRCh38.p14 ALT_REF_LOCI_7
Genomic
-
NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7
- Range
-
1901171..1919390 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331365.1 → XP_054187340.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054331366.1 → XP_054187341.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
30464593..30482813 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054355770.1 → XP_054211745.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0
-
XM_054355771.1 → XP_054211746.1 serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1
- UniProtKB/Swiss-Prot
- O00405, Q96QC0
- UniProtKB/TrEMBL
- A0A1U9X8C5, Q2L6I0