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LOC100118169 nuclear factor NF-kappa-B p100 subunit [ Nasonia vitripennis (jewel wasp) ]

Gene ID: 100118169, updated on 10-May-2024

Summary

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Gene symbol
LOC100118169
Gene description
nuclear factor NF-kappa-B p100 subunit
See related
NASONIABASE:NV13245
Gene type
protein coding
RefSeq status
MODEL
Organism
Nasonia vitripennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
104 current Nvit_psr_1.1 (GCF_009193385.2) 1 Unlocalized Scaffold NC_045757.1 (10775195..10780278)
103 previous assembly Nvit_psr_1 (GCF_009193385.1) 1 Unlocalized Scaffold NW_022279592.1 (12302873..12307720, complement)

Chromosome 1 - NC_045757.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L24 Neighboring gene lambda-crystallin homolog Neighboring gene odorant receptor 135 Neighboring gene zinc finger and BTB domain-containing protein 49

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor NF-kappa-B p100 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nvit_psr_1.1

Genomic

  1. NC_045757.1 Reference Nvit_psr_1.1

    Range
    10775195..10780278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003425045.5 → XP_003425093.1  nuclear factor NF-kappa-B p100 subunit isoform X2

    UniProtKB/TrEMBL
    A0A7M7GL58
    Conserved Domains (8) summary
    cd07884
    Location:53 → 246
    RHD-n_Relish; N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish
    cd00204
    Location:541 → 669
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00023
    Location:683 → 717
    Ank; Ankyrin repeat
    pfam12796
    Location:619 → 716
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:507 → 567
    Ank_4; Ankyrin repeats (many copies)
    pfam16179
    Location:254 → 355
    RHD_dimer; Rel homology dimerization domain
    sd00045
    Location:615 → 645
    ANK; ANK repeat [structural motif]
    cl14633
    Location:860 → 899
    DD; Death Domain Superfamily of protein-protein interaction domains

  2. XM_008217161.4 → XP_008215383.1  nuclear factor NF-kappa-B p100 subunit isoform X1

    See identical proteins and their annotated locations for XP_008215383.1

    UniProtKB/TrEMBL
    A0A7M7QKP0
    Conserved Domains (6) summary
    cd07884
    Location:92 → 285
    RHD-n_Relish; N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish
    PHA03095
    Location:543 → 757
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:654 → 684
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:658 → 755
    Ank_2; Ankyrin repeats (3 copies)
    pfam16179
    Location:293 → 394
    RHD_dimer; Rel homology dimerization domain
    cl14633
    Location:899 → 938
    DD; Death Domain Superfamily of protein-protein interaction domains

  3. XM_031931293.2 → XP_031787153.1  nuclear factor NF-kappa-B p100 subunit isoform X1

    UniProtKB/TrEMBL
    A0A7M7QKP0
    Conserved Domains (6) summary
    cd07884
    Location:92 → 285
    RHD-n_Relish; N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish
    PHA03095
    Location:543 → 757
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:654 → 684
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:658 → 755
    Ank_2; Ankyrin repeats (3 copies)
    pfam16179
    Location:293 → 394
    RHD_dimer; Rel homology dimerization domain
    cl14633
    Location:899 → 938
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein Strain
Heading Accession and Version

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