U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RLF RLF zinc finger [ Canis lupus familiaris (dog) ]

    Gene ID: 475315, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RLFprovided by VGNC
    Official Full Name
    RLF zinc fingerprovided by VGNC
    Primary source
    VGNC:VGNC:45604
    See related
    Ensembl:ENSCAFG00845010433
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 15
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (2809864..2902202, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (2980808..3072446, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (2793571..2885567, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (2717309..2809282, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (2777510..2869172, complement)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene zinc metallopeptidase STE24 Neighboring gene transmembrane and coiled-coil domains 2 Neighboring gene U4 spliceosomal RNA Neighboring gene palmitoyl-protein thioesterase 1 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein Rlf
    Names
    rearranged L-myc fusion

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      2809864..2902202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038687417.1 → XP_038543345.1  zinc finger protein Rlf isoform X1

      UniProtKB/TrEMBL
      A0A8C0JSA5, A0A8C0P6X9, A0A8I3N5S9, A0A8P0N5Z5
      Related
      ENSCAFP00845014337.1, ENSCAFT00845018367.1
      Conserved Domains (2) summary
      COG5236
      Location:646 → 822
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:716 → 736
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_038687418.1 → XP_038543346.1  zinc finger protein Rlf isoform X2

      UniProtKB/TrEMBL
      A0A8C0JPN8
      Conserved Domains (2) summary
      COG5236
      Location:430 → 606
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:500 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      2717309..2809282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038495403.1 → XP_038351331.1  zinc finger protein Rlf isoform X1

      Conserved Domains (2) summary
      COG5236
      Location:646 → 822
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:716 → 736
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_038495404.1 → XP_038351332.1  zinc finger protein Rlf isoform X2

      Conserved Domains (2) summary
      COG5236
      Location:430 → 606
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:500 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      2777510..2869172 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621635.1 → XP_038477563.1  zinc finger protein Rlf isoform X1

      Conserved Domains (2) summary
      COG5236
      Location:646 → 822
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:716 → 736
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_038621636.1 → XP_038477564.1  zinc finger protein Rlf isoform X2

      Conserved Domains (2) summary
      COG5236
      Location:430 → 606
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:500 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      2793571..2885567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557761.1 → XP_038413689.1  zinc finger protein Rlf isoform X1

      UniProtKB/TrEMBL
      A0A8C0JSA5, A0A8C0P6X9, A0A8I3N5S9, A0A8P0N5Z5
      Conserved Domains (2) summary
      COG5236
      Location:646 → 822
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:716 → 736
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_038557762.1 → XP_038413690.1  zinc finger protein Rlf isoform X2

      UniProtKB/TrEMBL
      A0A8C0JPN8
      Conserved Domains (2) summary
      COG5236
      Location:430 → 606
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:500 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      2980808..3072446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_843442.6 → XP_848535.1  zinc finger protein Rlf isoform X1

      See identical proteins and their annotated locations for XP_848535.1

      UniProtKB/TrEMBL
      A0A8C0JSA5, A0A8C0P6X9, A0A8I3N5S9, A0A8P0N5Z5
      Conserved Domains (2) summary
      COG5236
      Location:646 → 822
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:716 → 736
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_022427761.2 → XP_022283469.1  zinc finger protein Rlf isoform X2

      UniProtKB/TrEMBL
      A0A8C0JPN8
      Conserved Domains (2) summary
      COG5236
      Location:430 → 606
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:500 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous