ostf1 osteoclast stimulating factor 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ostf1provided by ZNC
Official Full Name: osteoclast stimulating factor 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040625-157
See related: Ensembl:ENSDARG00000091555 AllianceGenome:ZFIN:ZDB-GENE-040625-157
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:eu842; zgc:86718
Summary: Predicted to be involved in signal transduction. Predicted to be located in cytoplasm. Orthologous to human OSTF1 (osteoclast stimulating factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (6728238..6745511, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (6164224..6182939, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in signal transduction	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: osteoclast-stimulating factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212857.2 → NP_998022.1 osteoclast-stimulating factor 1

See identical proteins and their annotated locations for NP_998022.1

Status: VALIDATED

Source sequence(s)

CU856358

UniProtKB/Swiss-Prot

Q6TGW5

UniProtKB/TrEMBL

A5PN57

Related

ENSDARP00000133534.1, ENSDART00000168698.2

Conserved Domains (4) summary

cd11772
Location:16 → 68

SH3_OSTF1; Src Homology 3 domain of metazoan osteoclast stimulating factor 1

cd00204
Location:75 → 189

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:78 → 170

Ank_2; Ankyrin repeats (3 copies)

sd00045
Location:76 → 103

ANK; ANK repeat [structural motif]