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    CSPG4 chondroitin sulfate proteoglycan 4 [ Bos taurus (cattle) ]

    Gene ID: 533653, updated on 5-Mar-2024

    Summary

    Official Symbol
    CSPG4provided by VGNC
    Official Full Name
    chondroitin sulfate proteoglycan 4provided by VGNC
    Primary source
    VGNC:VGNC:57158
    See related
    BGD:BT12392; Ensembl:ENSBTAG00000012219
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
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    Genomic context

    See CSPG4 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (33182725..33218500)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene outer dense fiber of sperm tails 3 like 1 Neighboring gene sorting nexin 33 Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Pathways from PubChem

    General protein information

    Preferred Names
    chondroitin sulfate proteoglycan 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192782.3NP_001179711.2  chondroitin sulfate proteoglycan 4 precursor

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000021
      UniProtKB/TrEMBL
      F1MY84
      Related
      ENSBTAP00000016206.6, ENSBTAT00000016206.7
      Conserved Domains (2) summary
      cd00110
      Location:203358
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam16184
      Location:14531560
      Cadherin_3; Cadherin-like

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33182725..33218500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)