U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    IGSF9 immunoglobulin superfamily member 9 [ Bos taurus (cattle) ]

    Gene ID: 504209, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    IGSF9provided by VGNC
    Official Full Name
    immunoglobulin superfamily member 9provided by VGNC
    Primary source
    VGNC:VGNC:30097
    See related
    BGD:BT16262; Ensembl:ENSBTAG00000001481
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See IGSF9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (9740172..9759689)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis class M Neighboring gene SLAM family member 9 Neighboring gene uncharacterized LOC132344822 Neighboring gene transgelin 2 Neighboring gene microRNA mir-1584 Neighboring gene cilia and flagella associated protein 45

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein turtle homolog A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205532.1 → NP_001192461.1  protein turtle homolog A precursor

      See identical proteins and their annotated locations for NP_001192461.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000003
      UniProtKB/TrEMBL
      A0A3Q1MPR4, F1MNG8
      Related
      ENSBTAP00000001940.5, ENSBTAT00000001940.7
      Conserved Domains (8) summary
      cd00096
      Location:154 → 220
      Ig; Immunoglobulin domain
      smart00410
      Location:431 → 503
      IG_like; Immunoglobulin like
      cd00063
      Location:625 → 715
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:136 → 223
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:511 → 596
      fn3; Fibronectin type III domain
      pfam13927
      Location:226 → 305
      Ig_3; Immunoglobulin domain
      pfam15265
      Location:951 → 1071
      FAM196; FAM196 family
      cl11960
      Location:341 → 404
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      9740172..9759689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015461259.3 → XP_015316745.1  protein turtle homolog A isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MPR4, F1MNG8
      Conserved Domains (8) summary
      cd00096
      Location:154 → 220
      Ig; Immunoglobulin domain
      smart00410
      Location:431 → 503
      IG_like; Immunoglobulin like
      cd00063
      Location:625 → 715
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:136 → 223
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:511 → 596
      fn3; Fibronectin type III domain
      pfam13927
      Location:226 → 305
      Ig_3; Immunoglobulin domain
      pfam15265
      Location:951 → 1071
      FAM196; FAM196 family
      cl11960
      Location:341 → 404
      Ig; Immunoglobulin domain

    2. XM_059882171.1 → XP_059738154.1  protein turtle homolog A isoform X1

      UniProtKB/TrEMBL
      F1MNG8
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous