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    Smim17 small integral membrane protein 17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499067, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Smim17provided by RGD
    Official Full Name
    small integral membrane protein 17provided by RGD
    Primary source
    RGD:1559613
    See related
    Ensembl:ENSRNOG00000067119 AllianceGenome:RGD:1559613
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559613
    Summary
    Predicted to be integral component of membrane. Orthologous to human SMIM17 (small integral membrane protein 17). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 54.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    1q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (76475371..76523288, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (67442270..67493140, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (71114024..71164336, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 6 subfamily Z member 3 Neighboring gene olfactory receptor family 2 subfamily BD member 2 Neighboring gene zinc finger protein 28 Neighboring gene uncharacterized LOC134482882 Neighboring gene uncharacterized LOC134482884 Neighboring gene zinc finger protein 78 Neighboring gene zinc finger protein 829 like, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    small integral membrane protein 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109138.1 → NP_001102608.1  small integral membrane protein 17

      See identical proteins and their annotated locations for NP_001102608.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474102
      UniProtKB/TrEMBL
      A6KS72, D3ZKL1
      Related
      ENSRNOP00000087003.1, ENSRNOT00000116846.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      76475371..76523288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589551.3 → XP_017445040.1  small integral membrane protein 17 isoform X1

      UniProtKB/TrEMBL
      A6KS72, D3ZKL1

    2. XM_006228194.5 → XP_006228256.1  small integral membrane protein 17 isoform X1

      See identical proteins and their annotated locations for XP_006228256.1

      UniProtKB/TrEMBL
      A6KS72, D3ZKL1

    3. XM_017589552.3 → XP_017445041.1  small integral membrane protein 17 isoform X1

      UniProtKB/TrEMBL
      A6KS72, D3ZKL1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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