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    TFEB transcription factor EB [ Gallus gallus (chicken) ]

    Gene ID: 419922, updated on 3-Apr-2024

    Summary

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    Symbol
    TFEBprovided by CGNC
    Full Name
    transcription factor EBprovided by CGNC
    Primary source
    CGNC:2479
    See related
    Ensembl:ENSGALG00010026402
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 26
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (4966951..4981266, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (4934776..4949061, complement)

    Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene MyoD family inhibitor Neighboring gene uncharacterized LOC121107638 Neighboring gene gastricsin-like Neighboring gene progastricsin Neighboring gene fibroblast growth factor receptor substrate 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in humoral immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EB

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030922.1 → NP_001026093.1  transcription factor EB

      See identical proteins and their annotated locations for NP_001026093.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ719541
      UniProtKB/TrEMBL
      A0A8V1A5X5, Q5ZM43
      Related
      ENSGALP00010039477.1, ENSGALT00010064241.1
      Conserved Domains (3) summary
      cd00083
      Location:227 → 287
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam11851
      Location:315 → 451
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:4 → 155
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4966951..4981266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4934776..4949061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932997.1 → XP_046788953.1  transcription factor EB isoform X3

      UniProtKB/TrEMBL
      A0A8V1AD97

    2. XM_046932996.1 → XP_046788952.1  transcription factor EB isoform X3

      UniProtKB/TrEMBL
      A0A8V1AD97

    3. XM_046932995.1 → XP_046788951.1  transcription factor EB isoform X3

      UniProtKB/TrEMBL
      A0A8V1AD97

    4. XM_046932994.1 → XP_046788950.1  transcription factor EB isoform X2

    5. XM_046932993.1 → XP_046788949.1  transcription factor EB isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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