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    Tspan17 tetraspanin 17 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

    Gene ID: 103745390, updated on 11-Mar-2024

    Summary

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    Gene symbol
    Tspan17
    Gene description
    tetraspanin 17
    See related
    Ensembl:ENSNGAG00000017466
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nannospalax galili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008350126.1 (430192..439916, complement)

    NW_008350126.1Genomic Context describing neighboring genes Neighboring gene ubiquitin interaction motif containing 1 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene hexokinase 3 Neighboring gene unc-5 netrin receptor A Neighboring gene eukaryotic translation initiation factor 4E family member 1B Neighboring gene synuclein beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008350126 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of vascular endothelial growth factor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin-17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S.galili_v1.0 Primary Assembly

    Genomic

    1. NW_008350126.1 Reference S.galili_v1.0 Primary Assembly

      Range
      430192..439916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008847308.3 → XP_008845530.1  tetraspanin-17 isoform X2

      UniProtKB/TrEMBL
      A0A8C6RE11
      Conserved Domains (1) summary
      cd03159
      Location:103 → 223
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

    2. XM_008847307.3 → XP_008845529.1  tetraspanin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C6RE11
      Related
      ENSNGAP00000016866.1, ENSNGAT00000022487.1
      Conserved Domains (1) summary
      cd03159
      Location:115 → 235
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    Nucleotide Protein
    Heading Accession and Version

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