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DCAF1 DDB1 and CUL4 associated factor 1 [ Bos taurus (cattle) ]

Gene ID: 785711, updated on 6-Jun-2024

Summary

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Official Symbol
DCAF1provided by VGNC
Official Full Name
DDB1 and CUL4 associated factor 1provided by VGNC
Primary source
VGNC:VGNC:27899
See related
BGD:BT26037; Ensembl:ENSBTAG00000006501
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See DCAF1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (49277349..49371095)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene glutamate metabotropic receptor 2 Neighboring gene testis expressed 264, ER-phagy receptor Neighboring gene RAD54 like 2 Neighboring gene RNA binding motif protein 15B Neighboring gene mesencephalic astrocyte derived neurotrophic factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H2AT120 kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein VPRBP; DDB1- and CUL4-associated factor 1
XP_002697074.2
XP_005223063.1
XP_010816141.1
XP_059736143.1
XP_059736144.1
XP_059736145.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    49277349..49371095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059880160.1 → XP_059736143.1  DDB1- and CUL4-associated factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LW88, E1BDV4

  2. XM_059880161.1 → XP_059736144.1  DDB1- and CUL4-associated factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LW88, E1BDV4

  3. XM_010817839.4 → XP_010816141.1  DDB1- and CUL4-associated factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010816141.1

    UniProtKB/TrEMBL
    A0A3Q1LW88, E1BDV4
    Related
    ENSBTAP00000064963.2, ENSBTAT00000080631.2
    Conserved Domains (2) summary
    sd00039
    Location:1096 → 1133
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:1093 → 1311
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_002697028.7 → XP_002697074.2  DDB1- and CUL4-associated factor 1 isoform X1

    See identical proteins and their annotated locations for XP_002697074.2

    UniProtKB/TrEMBL
    A0A3Q1LW88, E1BDV4
    Related
    ENSBTAP00000030640.6, ENSBTAT00000030668.6
    Conserved Domains (2) summary
    sd00039
    Location:1096 → 1133
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:1093 → 1311
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  5. XM_059880162.1 → XP_059736145.1  DDB1- and CUL4-associated factor 1 isoform X2

    UniProtKB/TrEMBL
    E1BDV4

  6. XM_005223006.5 → XP_005223063.1  DDB1- and CUL4-associated factor 1 isoform X1

    See identical proteins and their annotated locations for XP_005223063.1

    UniProtKB/TrEMBL
    A0A3Q1LW88, E1BDV4
    Conserved Domains (2) summary
    sd00039
    Location:1096 → 1133
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:1093 → 1311
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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