U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tdrd9 tudor domain containing 9 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780352, updated on 2-May-2024

Summary

Go to the top of the page Help
Official Symbol
tdrd9provided by Xenbase
Official Full Name
tudor domain containing 9provided by Xenbase
Primary source
Xenbase:XB-GENE-5893104
See related
Ensembl:ENSXETG00000023069
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tdrd9 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
36
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (98692561..98813314)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (77811010..77931503)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene zinc finger FYVE-type containing 21 Neighboring gene protein phosphatase 1 regulatory subunit 13B Neighboring gene retinal degeneration 3 like Neighboring gene asparaginase Neighboring gene microRNA mir-203

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC146806

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in intracellular anatomical structure IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ATP-dependent RNA helicase TDRD9
NP_001238746.1
XP_012824154.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251817.1 → NP_001238746.1  ATP-dependent RNA helicase TDRD9

    See identical proteins and their annotated locations for NP_001238746.1

    Status: PROVISIONAL

    Source sequence(s)
    BC125754
    UniProtKB/TrEMBL
    A0JM63, F7C9C3
    Related
    ENSXETP00000049887.5, ENSXETT00000049887.5
    Conserved Domains (4) summary
    cd04508
    Location:676 → 724
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    smart00847
    Location:303 → 397
    HA2; Helicase associated domain (HA2) Add an annotation
    pfam00271
    Location:115 → 232
    Helicase_C; Helicase conserved C-terminal domain
    pfam00567
    Location:625 → 741
    TUDOR; Tudor domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    98692561..98813314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968700.3 → XP_012824154.2  ATP-dependent RNA helicase TDRD9 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RKX1, F7C9C3
    Related
    ENSXETP00000082626.2, ENSXETT00000068797.2
    Conserved Domains (2) summary
    COG1643
    Location:60 → 677
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd20431
    Location:872 → 972
    Tudor_TDRD9; Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001079422.1: Suppressed sequence

    Description
    NM_001079422.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.