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CDC42SE1 CDC42 small effector 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 749171, updated on 17-Aug-2024

Summary

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Official Symbol
CDC42SE1provided by VGNC
Official Full Name
CDC42 small effector 1provided by VGNC
Primary source
VGNC:VGNC:10564
Locus tag
CK820_G0046987
See related
Ensembl:ENSPTRG00000023156
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CDC42SE1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (98145293..98164822)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (133184913..133189743, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene semaphorin 6C Neighboring gene GA binding protein transcription factor subunit beta 2 Neighboring gene MLLT11 transcription factor 7 cofactor Neighboring gene chromosome 1 C1orf56 homolog Neighboring gene BCL2 interacting protein like Neighboring gene prune exopolyphosphatase 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CDC42 small effector protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    98145293..98164822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063813806.1 → XP_063669876.1  CDC42 small effector protein 1

    UniProtKB/TrEMBL
    A0A2J8JJC8, A0A6D2WW55, H2QZW3

  2. XM_063813810.1 → XP_063669880.1  CDC42 small effector protein 1

    UniProtKB/TrEMBL
    A0A2J8JJC8, A0A6D2WW55, H2QZW3

  3. XM_001166242.7 → XP_001166242.2  CDC42 small effector protein 1

    See identical proteins and their annotated locations for XP_001166242.2

    UniProtKB/TrEMBL
    A0A2J8JJC8, A0A6D2WW55, H2QZW3
    Conserved Domains (1) summary
    cl00113
    Location:29 → 67
    CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...

  4. XM_063813818.1 → XP_063669888.1  CDC42 small effector protein 1

    UniProtKB/TrEMBL
    A0A2J8JJC8, A0A6D2WW55, H2QZW3

  5. XM_063813814.1 → XP_063669884.1  CDC42 small effector protein 1

    UniProtKB/TrEMBL
    A0A2J8JJC8, A0A6D2WW55, H2QZW3
Nucleotide Protein
Heading Accession and Version

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