EMC1 ER membrane protein complex subunit 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: EMC1provided by VGNC
Official Full Name: ER membrane protein complex subunit 1provided by VGNC
Primary source: VGNC:VGNC:530
Locus tag: CK820_G0039318
See related: Ensembl:ENSPTRG00000000261
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	1	NC_072398.2 (211948259..211980888)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	1	NC_072398.1 (19318409..19351081, complement)

Chromosome 1 - NC_072398.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

SHGC-74286 (e-PCR)
- UniSTS:34824

NoName (e-PCR)
- UniSTS:9484

SHGC-74301 (e-PCR)
- UniSTS:64014

SHGC-82794 (e-PCR)
- UniSTS:95771

L17705 (e-PCR)
- UniSTS:66091

WI-14328 (e-PCR)
- UniSTS:13390

RH25318 (e-PCR)
- UniSTS:90750

WI-11429 (e-PCR)
- UniSTS:10881

SHGC-67307 (e-PCR)
- UniSTS:89991

D11S3114 (e-PCR)
- UniSTS:152207

GDB:631802 (e-PCR)
- UniSTS:158429

GDB:631813 (e-PCR)
- UniSTS:158430

Homology

NCBI Orthologs

Orthologs from OrthoDB

Clone Names

KIAA0090

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein folding in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of EMC complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ER membrane protein complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

211948259..211980888

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001162981.6 → XP_001162981.2 ER membrane protein complex subunit 1 isoform X3

See identical proteins and their annotated locations for XP_001162981.2

UniProtKB/TrEMBL

A0A2I3RQ67, A0A2J8KEM1, A0A6D2XXX5, H2R9E3

Related

ENSPTRP00000052749.3

Conserved Domains (2) summary

pfam07774
Location:787 → 992

DUF1620; Protein of unknown function (DUF1620)

cl11493
Location:53 → 120

PQQ_DH_like; PQQ-dependent dehydrogenases and related proteins
XM_009449585.3 → XP_009447860.1 ER membrane protein complex subunit 1 isoform X1

UniProtKB/TrEMBL

A0A2I3RQ67, A0A2J8KEN1

Conserved Domains (2) summary

pfam07774
Location:786 → 991

DUF1620; Protein of unknown function (DUF1620)

cl11493
Location:53 → 120

PQQ_DH_like; PQQ-dependent dehydrogenases and related proteins
XM_024354778.3 → XP_024210546.1 ER membrane protein complex subunit 1 isoform X2

UniProtKB/TrEMBL

A0A2I3RQ67

Conserved Domains (2) summary

pfam07774
Location:766 → 971

DUF1620; Protein of unknown function (DUF1620)

cl11493
Location:53 → 120

PQQ_DH_like; PQQ-dependent dehydrogenases and related proteins