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TSPAN18 tetraspanin 18 [ Canis lupus familiaris (dog) ]

Gene ID: 611375, updated on 5-Mar-2024

Summary

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Official Symbol
TSPAN18provided by VGNC
Official Full Name
tetraspanin 18provided by VGNC
Primary source
VGNC:VGNC:47917
See related
Ensembl:ENSCAFG00845005948
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TSPAN18 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (45045146..45231055, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (43116656..43302513, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (44815088..45000937, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (44528315..44714214, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (44081829..44267706, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119864233 Neighboring gene uncharacterized LOC102157084 Neighboring gene tumor protein p53 inducible protein 11 Neighboring gene uncharacterized LOC111090976 Neighboring gene uncharacterized LOC111090975 Neighboring gene uncharacterized LOC119864135 Neighboring gene uncharacterized LOC119864235 Neighboring gene CD82 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-18; LOW QUALITY PROTEIN: tetraspanin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    45045146..45231055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038424574.1 → XP_038280502.1  tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  2. XM_038424572.1 → XP_038280500.1  tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Related
    ENSCAFP00845008182.1, ENSCAFT00845010519.1
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  3. XM_038424573.1 → XP_038280501.1  tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    44528315..44714214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038500851.1 → XP_038356779.1  LOW QUALITY PROTEIN: tetraspanin-18

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    44081829..44267706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038627621.1 → XP_038483549.1  tetraspanin-18

    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  2. XM_038627619.1 → XP_038483547.1  tetraspanin-18

    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  3. XM_038627620.1 → XP_038483548.1  tetraspanin-18

    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    44815088..45000937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038563502.1 → XP_038419430.1  LOW QUALITY PROTEIN: tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    43116656..43302513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038453881.1 → XP_038309809.1  tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  2. XM_038453879.1 → XP_038309807.1  tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  3. XM_038453880.1 → XP_038309808.1  tetraspanin-18

    UniProtKB/TrEMBL
    A0A8C0KUZ0, A0A8C0TAH6, A0A8I3RSZ2, A0A8P0NBH5
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family
Nucleotide Protein
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