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IFT70B intraflagellar transport 70B [ Canis lupus familiaris (dog) ]

Gene ID: 610209, updated on 5-Mar-2024

Summary

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Gene symbol
IFT70B
Gene description
intraflagellar transport 70B
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
TTC30B
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 36
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 36 NC_051840.1 (21415119..21418526, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 36 NC_006618.4 (21290023..21293427, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 36 NC_049257.1 (21602379..21605784, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 36 NC_049296.1 (21485241..21488653, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 36 NC_049777.1 (21487275..21490678, complement)

Chromosome 36 - NC_051840.1Genomic Context describing neighboring genes Neighboring gene NFE2 like bZIP transcription factor 2 Neighboring gene microRNA mir-8796 Neighboring gene alkylglycerone phosphate synthase Neighboring gene uncharacterized LOC111094215 Neighboring gene tetratricopeptide repeat domain 30A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intraciliary transport particle B binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axonemal microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tetratricopeptide repeat protein 30B; tetratricopeptide repeat protein 30B
Names
tetratricopeptide repeat domain 30B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051840.1 Reference ROS_Cfam_1.0

    Range
    21415119..21418526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038447168.1 → XP_038303096.1  tetratricopeptide repeat protein 30B

    UniProtKB/TrEMBL
    A0A8C0P1S1, A0A8C0T0D6
    Conserved Domains (2) summary
    TIGR02917
    Location:15 → 183
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:159 → 182
    TPR; TPR repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049296.1 Alternate UMICH_Zoey_3.1

    Range
    21485241..21488653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038521243.1 → XP_038377171.1  LOW QUALITY PROTEIN: tetratricopeptide repeat protein 30B

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049777.1 Alternate UNSW_CanFamBas_1.0

    Range
    21487275..21490678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038649364.1 → XP_038505292.1  tetratricopeptide repeat protein 30B

    Conserved Domains (2) summary
    TIGR02917
    Location:15 → 183
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:159 → 182
    TPR; TPR repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049257.1 Alternate UU_Cfam_GSD_1.0

    Range
    21602379..21605784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584952.1 → XP_038440880.1  tetratricopeptide repeat protein 30B

    UniProtKB/TrEMBL
    A0A8C0P1S1, A0A8C0T0D6
    Conserved Domains (2) summary
    TIGR02917
    Location:15 → 183
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:159 → 182
    TPR; TPR repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006618.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21290023..21293427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847647.5 → XP_852740.2  tetratricopeptide repeat protein 30B

    UniProtKB/TrEMBL
    A0A8C0P1S1, A0A8C0T0D6
    Conserved Domains (2) summary
    TIGR02917
    Location:15 → 183
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:159 → 182
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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